PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03757.1.g00040.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 332aa    MW: 36408.9 Da    PI: 9.6464
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03757.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.3e-181461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg+WT  Ede l+ +vk +Ggg+W+ ++++ g++R++k+c++rw++yl
  Zpz_sc03757.1.g00040.1.am.mk 14 RGAWTSKEDEVLAAYVKAHGGGRWREVPQRAGLRRCGKSCRLRWLNYL 61
                                  89********************************************97 PP
2Myb_DNA-binding44.73e-1467115147
                                   TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                                   rg+ + +E++l+++++k+lG++    W++Ia +++ gRt++++k++w++ 
  Zpz_sc03757.1.g00040.1.am.mk  67 RGNISDDEEDLIIRLHKLLGNRsmsAWSLIAGRLP-GRTDNEIKNYWNST 115
                                   78999******************************.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-23664IPR009057Homeodomain-like
PROSITE profilePS5129424.164965IPR017930Myb domain
SuperFamilySSF466892.62E-2611112IPR009057Homeodomain-like
SMARTSM007172.8E-121363IPR001005SANT/Myb domain
PfamPF002491.9E-151461IPR001005SANT/Myb domain
CDDcd001673.97E-91661No hitNo description
Gene3DG3DSA:1.10.10.606.2E-2165118IPR009057Homeodomain-like
PROSITE profilePS5129416.90166120IPR017930Myb domain
SMARTSM007174.2E-1366118IPR001005SANT/Myb domain
PfamPF002492.1E-1267115IPR001005SANT/Myb domain
CDDcd001671.08E-971116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGRRACCAKE GVKRGAWTSK EDEVLAAYVK AHGGGRWREV PQRAGLRRCG KSCRLRWLNY  60
LRPNIKRGNI SDDEEDLIIR LHKLLGNRSM SAWSLIAGRL PGRTDNEIKN YWNSTLSRRP  120
GSGVSTQVAG YHSTPMASAS CDTGQTSAPV GDRDSGSDGT AAEAVWAPKP VRCTSGLFFL  180
RDAAPQAETR TGGGERSDDC SSSAASASGN ADEPCFSVGA DWTDDVRALA SFLESDEEWG  240
NLLWFSSRAG ERVLEVKLEP KGIFILLLQP GTLHRHLFFT HGCHELDRGR RRAGLTMARC  300
SGAAAQAEGE RGRRSRRRGR RRWLFGVANC EA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-22141197107B-MYB
1h8a_C2e-221211925127MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1312320RRSRRRGRR
Functional Description ? help Back to Top
Source Description
UniProtControls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03757.1.g00040.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1350185e-79AY135018.1 Zea mays PL transcription factor (pl) mRNA, pl-bol3 allele, complete cds.
GenBankAY1350195e-79AY135019.1 Zea mays PL transcription factor (pl) mRNA, pl-W22 allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812125.11e-104anthocyanin regulatory C1 protein-like
SwissprotP102908e-88MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBLA0A2S3HKW71e-102A0A2S3HKW7_9POAL; Uncharacterized protein
STRINGSb10g006700.12e-96(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-54myb domain protein 5
Publications ? help Back to Top
  1. Chen B,Wang X,Hu Y,Wang Y,Lin Z
    Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco.
    Mol. Biotechnol., 2004. 26(3): p. 187-92
    [PMID:15004287]
  2. Paz-Ares J,Ghosal D,Saedler H
    Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus.
    EMBO J., 1990. 9(2): p. 315-21
    [PMID:2303027]
  3. Cone KC,Burr FA,Burr B
    Molecular analysis of the maize anthocyanin regulatory locus C1.
    Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5
    [PMID:3025847]
  4. Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H
    The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators.
    EMBO J., 1987. 6(12): p. 3553-8
    [PMID:3428265]
  5. Scheffler B, et al.
    Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene.
    Mol. Gen. Genet., 1994. 242(1): p. 40-8
    [PMID:7904044]
  6. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]
  7. Singer T,Gierl A,Peterson PA
    Three new dominant C1 suppressor alleles in Zea mays.
    Genet. Res., 1998. 71(2): p. 127-32
    [PMID:9717435]