PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03668.1.g00080.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 340aa    MW: 37378.9 Da    PI: 6.5133
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03668.1.g00080.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.29.1e-14184228347
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   +WT+eE++l++ + k++G g+W+ I+r + + Rt+ q+ s+ qky
  Zpz_sc03668.1.g00080.1.am.mk 184 PWTEEEHKLFLIGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKY 228
                                   8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.1E-53486IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-43582IPR009057Homeodomain-like
SuperFamilySSF466892.02E-103691IPR009057Homeodomain-like
PROSITE profilePS500906.2843684IPR017877Myb-like domain
CDDcd001671.60E-53880No hitNo description
PROSITE profilePS5129418.329177233IPR017930Myb domain
SuperFamilySSF466891.57E-17179233IPR009057Homeodomain-like
TIGRFAMsTIGR015576.6E-17180231IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.1E-11181227IPR009057Homeodomain-like
SMARTSM007171.6E-11181231IPR001005SANT/Myb domain
PfamPF002495.0E-11184228IPR001005SANT/Myb domain
CDDcd001671.84E-10184229No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MMKESWMEVL PPPPAAPYFA GQAGGWLLQD RMAGGGVWTL EENKMFERAL ANVDWDAPDR  60
WEQVASFLPG RTVADVASHF DDLENDVYFI EAGLVPLPHY GAGCGGSQSA EFTFDWDAGD  120
LGFKRSCYVV GGKRGRGPDQ ERKKGSAEFT FDWDAGDLGF KRSCYVVGGK RGRGPDQERK  180
KGVPWTEEEH KLFLIGLKKY GRGDWRNISR NFVTSRTPTQ VASHAQKYFI RLNSGGKDKR  240
RSSIHDITTV NLPDEDSSNP SPSPPSVVGA TSTPSSGGPA MSEQFGVLVD SKPAPPPMGQ  300
QQHHFLPHPY GNVKLEPHHG GIFDDSVLMQ MQCGQLQPLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-1535114887RADIALIS
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03668.1.g00080.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0947401e-135FP094740.1 Phyllostachys edulis cDNA clone: bphylf046m24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961904.11e-160transcription factor DIVARICATA
TrEMBLK3Z8E61e-159K3Z8E6_SETIT; Uncharacterized protein
STRINGSi022816m1e-160(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.13e-75MYB family protein