PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03663.1.g00040.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 697aa    MW: 77307.3 Da    PI: 9.4452
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03663.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.32.7e-084825201755
                                   HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                      Homeobox  17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                   e+ +k +yps++++  LA+++gL+ +q+ +WF N+R ++
  Zpz_sc03663.1.g00040.1.am.mk 482 EMHYKWPYPSETQKGALAESTGLDLKQINNWFINQRKRH 520
                                   4555789*****************************885 PP
2ELK361.5e-12440461122
                           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                   ELKh+Ll+KYsgyL+sLkqE+s
  Zpz_sc03663.1.g00040.1.am.mk 440 ELKHHLLKKYSGYLSSLKQELS 461
                                   9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.4E-18274321IPR005540KNOX1
PfamPF037902.8E-20275319IPR005540KNOX1
SMARTSM012562.7E-24328388IPR005541KNOX2
PfamPF037912.5E-16334386IPR005541KNOX2
PfamPF037891.8E-9440461IPR005539ELK domain
PROSITE profilePS5121311.331440460IPR005539ELK domain
SMARTSM011884.9E-7440461IPR005539ELK domain
PROSITE profilePS5007112.584460523IPR001356Homeobox domain
SuperFamilySSF466896.84E-19461536IPR009057Homeodomain-like
SMARTSM003892.2E-12462527IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-27465525IPR009057Homeodomain-like
CDDcd000863.51E-11472524No hitNo description
PfamPF059204.9E-16480519IPR008422Homeobox KN domain
PROSITE patternPS000270498521IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MARRAWGMID LRLFNSGSLP FPRRDTNQQE RVRGRSQSLS EPRAPHIPRR PARSPPHARA  60
FPLPAHVLSS QGYCQRHYHR NNSLGRLELR GYYHHRQGYI LSRSLHCAPR PAPGFRREKA  120
KLQAPPPPSP LLSPKPFSSF SPPENFTSTP NHPLFSAGSR SSDNGRRARS LHQYIPGDRP  180
TPMEEITHHF GVGGSGQGQQ QHHHSWVSAL GAVLAPPPSA GLPLTLNTVA AGNSGAHSGS  240
SNPVLQLANG GSLLDACVKA KQPSSSSPYA GDVEAIKAKI ISHPHYYSLL AAYLECQKAS  300
PVGAPPEVSA RLTAIAQEVE ARQRTSLVGL GSATEPELDQ FMVSHFYRLI NEAYHEMLVK  360
FREELTRPLQ EAMEFMRRVE SQLNSLSISG RSLRRILSSD ALVHYAYPAQ RGTGSSEEDQ  420
EGSGGETELP EVDAHGVDQE LKHHLLKKYS GYLSSLKQEL SKKKKKGKLP KEARQQLLNW  480
WEMHYKWPYP SETQKGALAE STGLDLKQIN NWFINQRKRH WKPSEEMHHL MMDGYHTPNA  540
FYMDGHFLNE PGLYRFDRTC DAIDAPDAPR CGEVRIARSM HGLPLWVGIL EEAAVAKLVD  600
WTGRVPNAAL CCDLRSCGLG SLAPGRAMEL PAAVSRSPSR LQARVVQDSC PESRHDAEAD  660
AGPPPRRSPA FYSSVFAQIE EIGWERLVSS KGNDGIS
Functional Description ? help Back to Top
Source Description
UniProtBinds to RNA (PubMed:17965274). Possible transcription factor that regulates genes involved in development. Mutations in KN-1 alter leaf development. Foci of cells along the lateral vein do not differentiate properly but continue to divide, forming knots. May participate in the switch from indeterminate to determinate cell fates. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:17965274}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03663.1.g00040.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3174211e-139DQ317421.1 Chasmanthium latifolium KNOTTED1 homeodomain protein (KN1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981913.10.0homeotic protein knotted-1
SwissprotP243450.0KN1_MAIZE; Homeotic protein knotted-1
TrEMBLA0A0A9CTZ30.0A0A0A9CTZ3_ARUDO; Kn1
STRINGGRMZM2G017087_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98863145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.13e-78KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Lowe B,Mathern J,Hake S
    Active Mutator elements suppress the knotted phenotype and increase recombination at the Kn1-O tandem duplication.
    Genetics, 1992. 132(3): p. 813-22
    [PMID:1334895]
  2. Sinha N,Hake S
    Mutant characters of knotted maize leaves are determined in the innermost tissue layers.
    Dev. Biol., 1990. 141(1): p. 203-10
    [PMID:2391001]
  3. Chen H,Jackson D,Kim JY
    Identification of evolutionarily conserved amino acid residues in homeodomain of KNOX proteins for intercellular trafficking.
    Plant Signal Behav, 2014. 9(3): p. e28355
    [PMID:24603432]
  4. Sinha NR,Williams RE,Hake S
    Overexpression of the maize homeo box gene, KNOTTED-1, causes a switch from determinate to indeterminate cell fates.
    Genes Dev., 1993. 7(5): p. 787-95
    [PMID:7684007]
  5. Greene B,Walko R,Hake S
    Mutator insertions in an intron of the maize knotted1 gene result in dominant suppressible mutations.
    Genetics, 1994. 138(4): p. 1275-85
    [PMID:7896105]
  6. Mathern J,Hake S
    Mu element-generated gene conversions in maize attenuate the dominant knotted phenotype.
    Genetics, 1997. 147(1): p. 305-14
    [PMID:9286690]