PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc03609.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 413aa MW: 44772.3 Da PI: 4.317 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.3e-19 | 54 | 103 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g Zpz_sc03609.1.g00010.1.am.mk 54 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 103 789******.7*********33....35**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.87E-30 | 53 | 110 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.6E-27 | 54 | 110 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-19 | 54 | 111 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.599 | 54 | 111 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-13 | 54 | 103 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-35 | 54 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-8 | 55 | 66 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-8 | 77 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MALKRKASPG MTDDLPCEDL RSPPLAAVAS AAEPRESWAD AVGAVAAAQR ARKRFVGVRQ 60 RPSGRWVAEI KDTIQKIRVW LGTFDTAEEA ARAYDEAACL LRGSNTRTNF WPRPAGTAAA 120 AMAARQHDSV PPTTALPSKV TNLLLLRLKK ARSGHGFGDY LDVSATTEQS LMQQQQQLRQ 180 DDGLAEDHCN FQVDDFLSFD STGDESGIVR HEDESNCSQE ADDGGEEVVM EEEEEAPLDL 240 RFMDANPCPP AEIITPFEMV ASELGGVEAE PDADGGYGTA DAEPSTTAIH EVLKRMKYER 300 KISASLYALS GVSECLRMHL IDADDLSGDA ASRRHELAFS GLREACRKKQ HEQQQEADEE 360 GGDVGREEER ESSTSSNISS LSSSPEAAST SPEANAVDSD VLLWSSLDLP SIC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc03609.1.g00010.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012620 | 1e-73 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796844.1 | 1e-123 | uncharacterized protein LOC112876880 | ||||
TrEMBL | A0A2T7C3V4 | 1e-128 | A0A2T7C3V4_9POAL; Uncharacterized protein | ||||
STRING | GRMZM2G010100_P01 | 1e-120 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5482 | 30 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 6e-20 | related to AP2 11 |