PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc03594.1.g00040.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NF-YC | ||||||||
Protein Properties | Length: 214aa MW: 22624 Da PI: 4.6139 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 48.6 | 1.8e-15 | 94 | 175 | 20 | 100 |
NF-YC 20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr.tdifdflvdivprd 99 lPl r+k+i+++d d+k++++ea +l+s a elf+ l+ + a rr+++ + + aav + dfl+d p d Zpz_sc03594.1.g00040.1.sm.mk 94 VLPLGRVKRIIRVDRDIKKVTSEAAMLISAATELFLGSLASGAHTAAAARGRRAVRSAHVRAAVRAhRPTADFLLDCLPVD 174 59*************************************************************97515699*******998 PP NF-YC 100 e 100 e Zpz_sc03594.1.g00040.1.sm.mk 175 E 175 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.12E-15 | 92 | 173 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.6E-17 | 94 | 158 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.6E-13 | 95 | 157 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MATAGDPTEE VEHVGEETID AMEPVGEGTT EAMEQVGEET TDAMEQVGEE SRGPTEVSGK 60 KPDAEATEHI GEEPKREEAD AEEEEAGGAS LRPVLPLGRV KRIIRVDRDI KKVTSEAAML 120 ISAATELFLG SLASGAHTAA AARGRRAVRS AHVRAAVRAH RPTADFLLDC LPVDEEAPRA 180 RSTAGSGSGR GGDGEAKSLP RGTRRIDAFF QKVT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc03594.1.g00040.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879187.1 | 2e-45 | tropomyosin | ||||
TrEMBL | A0A3B6EFW6 | 9e-45 | A0A3B6EFW6_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446N6Y2 | 9e-45 | A0A446N6Y2_TRITD; Uncharacterized protein | ||||
STRING | Pavir.J40808.1.p | 4e-47 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13342 | 26 | 28 |