PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03545.1.g00050.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 358aa    MW: 38285.3 Da    PI: 7.6224
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03545.1.g00050.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.14e-17237286255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr +k +g+Wv+eIr p   g ++r++lg+f +ae+Aa a++ a+++l+g
  Zpz_sc03545.1.g00050.1.am.mk 237 QYRGVRKRK-WGKWVSEIRQP---GTKTRIWLGSFESAEMAAVAHDVAALRLRG 286
                                   69****999.**********8...325*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.9E-31237295IPR001471AP2/ERF domain
PROSITE profilePS5103223.512237294IPR001471AP2/ERF domain
SMARTSM003806.6E-38237300IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-21237295IPR016177DNA-binding domain
PRINTSPR003671.7E-9238249IPR001471AP2/ERF domain
PfamPF008471.0E-10238286IPR001471AP2/ERF domain
CDDcd000183.80E-30238294No hitNo description
PRINTSPR003671.7E-9260276IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MLDDYRVVWH HGETPHEIIG KGFVVVATAG AIITGSGPVL YGCTYQYSAR GGMDNVATTA  60
TRGSPSSPSR IRQSRPDPQH CAAASCTQHD WEGTLARYGP ATFRTRACIR TRGVLLAVGL  120
TRIHAPFFPD LDLPPSTDPS SKISHSDHHN AMAAGAVSET DLRSRCSSIA LLHGCPLLLA  180
PHASSLALGA LRMHSLLKYS SLRVVSMDHM AATDLLLLPA TSTIAGSGGG GGSGQQQYRG  240
VRKRKWGKWV SEIRQPGTKT RIWLGSFESA EMAAVAHDVA ALRLRGRDAQ LNFPGSAVPG  300
RAGELAGSDE EFDLDLGSPR LWAEMAEAML LDPPRWDTGV SDAEVAQCWS HGSLWDAC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-16236294463ATERF1
3gcc_A7e-16236294463ATERF1
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03545.1.g00050.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9581355e-73EU958135.1 Zea mays clone 1674836 dehydration-responsive element-binding protein 1D mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.13e-21ERF family protein