PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03496.1.g00060.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 568aa    MW: 61508.8 Da    PI: 7.4778
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03496.1.g00060.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.94.5e-103453821954
                                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                     Fe   ++yp+  +++ LAk++gLt +qV++WF N R +
  Zpz_sc03496.1.g00060.1.sm.mkhc 345 FEHflHPYPTDGDKQMLAKQTGLTRNQVSNWFINARVR 382
                                     664459******************************88 PP
2BELL85.84.9e-28212280472
                            BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                     e + +k++L+s+++eV+krY+qy+ q+ +v++sFe+vag  +a+p++++Al+a++ hF+cLk +i +q+
  Zpz_sc03496.1.g00060.1.sm.mkhc 212 EQEWRKTRLISMMDEVCKRYRQYYRQVLAVMASFETVAGFSNAAPFAAMALRAMASHFKCLKSMIQSQL 280
                                     7789**************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.3E-31141278IPR006563POX domain
PfamPF075265.6E-35146276IPR006563POX domain
PROSITE profilePS5007112.293323386IPR001356Homeobox domain
CDDcd000866.86E-14326387No hitNo description
SMARTSM003892.4E-11326390IPR001356Homeobox domain
SuperFamilySSF466891.71E-17327394IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.8E-29329390IPR009057Homeodomain-like
PfamPF059205.9E-19343382IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MSYSGGAEHH CHSPGELLLH HHAQHVAGQL YHVPQHSRRE KLRFPAPDAA ADSPPHAQQH  60
GAWLPTPPPP LPPAFYSYAS SSTTSSYSPH SPTLAQAQLV SHGGVAAPPL TQNFALSLSS  120
SSSNPPPTSR RQLAGPYGPF TGYAAVLARS RFLAPAEKLL QEICDVGGAA ANVDRSVSDE  180
GLLDADPMEA IDHDMDGGDR AASDAGPMSG SEQEWRKTRL ISMMDEVCKR YRQYYRQVLA  240
VMASFETVAG FSNAAPFAAM ALRAMASHFK CLKSMIQSQL RNTTKVAVVN ERLSKDITMF  300
GLTGGGASAL ERASTVTAFG QPHNIWRPQR GLPEHAVSVL RAWLFEHFLH PYPTDGDKQM  360
LAKQTGLTRN QVSNWFINAR VRLWKPMVEE IHNLEMRQAH KHPASDKSQH GVHYHAQHSS  420
ECSGKPSDPS DSQLAQSSSI TRNHDIPASH GFADELSQVS PSIHGQISFP YNGVATVHQH  480
SVAPSQHQHV GGGFGGAGNG GVSLTLGLHQ NHKFCIAEPL PAYLPPNLAH RFGLEDISDT  540
AYVMATFGGQ DRHIAREIIG GHLSGQDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A1e-16332390563Homeobox protein Meis2
4xrm_B1e-16332390563Homeobox protein Meis2
4xrs_A1e-16332389158Homeobox protein Meis1
4xrs_B1e-16332389158Homeobox protein Meis1
5bng_A1e-16332390159Homeobox protein Meis2
5bng_B1e-16332390159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03496.1.g00060.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970574.10.0BEL1-like homeodomain protein 9
TrEMBLK3XFT40.0K3XFT4_SETIT; Uncharacterized protein
STRINGSi000753m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.13e-65TALE family protein