PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc03451.1.g00020.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Nin-like

Protein Properties

Length: 437aa MW: 47290.1 Da PI: 6.0772

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc03451.1.g00020.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	67.4	2.2e-21	348	398	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++ d+s+yF+lp+++A+keL+vc+TvLK i R++GI RWP+Rki+++ Zpz_sc03451.1.g00020.1.am.mk 348 TSKLERRDISRYFHLPMAEACKELQVCATVLKCIRRKFGITRWPYRKINKI 398 678999******************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.88	333	418	IPR003035	RWP-RK domain
Pfam	PF02042	7.2E-20	351	398	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MEKYCKSGTA VTAATNSAVC PSYVQTAAGD TCHFAPSPSI APVCVPHTLA AQRAAMAANG 60 DRAEGQWPFD PLLVPDVDVM HLLDVRGGLY SPPAATPTQN VTSNGCYSGN PFDWTAMASH 120 GAYSSAESDA PPAVGATMAG GASSTSDRQD VSAPSSYVHK GVLDCTGCQL LREILHCNGF 180 ETTKLCIHGA AGLFFHATLE VYRHASHEGS AMAPTHRSFT DFMARDYAWV KHYLLDYAQQ 240 RAAGGYTVVY DSTSDFHDVL CTSMVGIGDQ ADDRHEIAAS AEAKIIVDDD DQLLANAGAA 300 VHPMVVEEED EPAASGPSQP KNNAVDKQKQ QVVQPGMRSR LAIQRERTSK LERRDISRYF 360 HLPMAEACKE LQVCATVLKC IRRKFGITRW PYRKINKIDN QIAKLRENGN GSAAAMEEIE 420 KLIDARREII DSPPTET

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MEKYCKSGTA VTAATNSAVC PSYVQTAAGD TCHFAPSPSI APVCVPHTLA AQRAAMAANG  60
DRAEGQWPFD PLLVPDVDVM HLLDVRGGLY SPPAATPTQN VTSNGCYSGN PFDWTAMASH  120
GAYSSAESDA PPAVGATMAG GASSTSDRQD VSAPSSYVHK GVLDCTGCQL LREILHCNGF  180
ETTKLCIHGA AGLFFHATLE VYRHASHEGS AMAPTHRSFT DFMARDYAWV KHYLLDYAQQ  240
RAAGGYTVVY DSTSDFHDVL CTSMVGIGDQ ADDRHEIAAS AEAKIIVDDD DQLLANAGAA  300
VHPMVVEEED EPAASGPSQP KNNAVDKQKQ QVVQPGMRSR LAIQRERTSK LERRDISRYF  360
HLPMAEACKE LQVCATVLKC IRRKFGITRW PYRKINKIDN QIAKLRENGN GSAAAMEEIE  420
KLIDARREII DSPPTET

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc03451.1.g00020.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021321666.1	2e-87	uncharacterized protein LOC8084238
TrEMBL	A0A368QD38	2e-94	A0A368QD38_SETIT; Uncharacterized protein
STRING	Si025242m	8e-84	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8055	29	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	3e-11	RWP-RK domain-containing protein