PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc03413.1.g00020.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 230aa MW: 23993.8 Da PI: 4.511 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.7 | 2.2e-16 | 15 | 63 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr ++ +g+Wv+e+r p g ++r++lg++ tae Aa+a++aa ++l+g Zpz_sc03413.1.g00020.1.sm.mk 15 YKGVRMRS-WGSWVSEVRAP---GAKTRIWLGSHSTAEAAARAYDAALLCLRG 63 9****998.*******9998...445*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.508 | 14 | 73 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-26 | 14 | 79 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-16 | 14 | 72 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-26 | 14 | 73 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.8E-10 | 15 | 63 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-8 | 15 | 26 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.49E-14 | 15 | 75 | No hit | No description |
PRINTS | PR00367 | 2.9E-8 | 37 | 53 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MVKTAAKRNG GKRTYKGVRM RSWGSWVSEV RAPGAKTRIW LGSHSTAEAA ARAYDAALLC 60 LRGSAAAADF NFPVQIPIND IPHAAMSPKS IQRVAAAAAA ATSATAFASR ADDADVACCS 120 GDDSTPACSS SSGSDASAVS SPGSTVTSEA ETDAACCHGD QKLRDGDVVD YSLLADIDAY 180 FPSPKCMEYA MMDPCSAFFA PTPMAMMSDD DVCWLDGNDV ALWAFSTLDC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc03413.1.g00020.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU968979 | 2e-62 | EU968979.1 Zea mays clone 325346 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004964908.1 | 1e-79 | ethylene-responsive transcription factor ERF014 | ||||
TrEMBL | K3Y1B3 | 3e-78 | K3Y1B3_SETIT; Uncharacterized protein | ||||
STRING | Si007977m | 5e-79 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3197 | 34 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G44830.1 | 8e-23 | ERF family protein |