PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03372.1.g00040.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 746aa    MW: 77504.1 Da    PI: 6.7626
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03372.1.g00040.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.88.3e-11272328155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GV++++++gr++A+++d  +     k+++ + g ++ +++Aa+a++ a++k++g
  Zpz_sc03372.1.g00040.1.sm.mk 272 SIYRGVTRHRWTGRYEAHLWDnSCR-RegKTRKGRQGGYDKEDKAARAYDLAALKYWG 328
                                   57*******************4444.24666444557799999*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.83E-14272338IPR016177DNA-binding domain
CDDcd000182.80E-17272338No hitNo description
PfamPF008472.1E-8272328IPR001471AP2/ERF domain
PROSITE profilePS5103217.253273336IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-11273337IPR001471AP2/ERF domain
SMARTSM003804.1E-22273342IPR001471AP2/ERF domain
SMARTSM003806.8E-4397455IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-5415451IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-6417450IPR001471AP2/ERF domain
PROSITE profilePS510328.57424449IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MATVNNWLAF SLSPQELPPS QTESTLMSAA ATDDVSGDMC FNIPQDWSMR GSELSALVAE  60
PKLEDFLGGI SFSGQNHKAS CNMIPSSSSA CYGSSGVISA GYQLYHQPSS ALQFADSVMV  120
ASSAGVHDGR GMLSVATANC GGATVASSNN GGSIGLSMIK NWLRSQPAPL QPRVVDAIDG  180
AQATQGRLSL SMNMAGPQGS GMPVAGERGR APESVSTSVH GGAMVVRKED SSGGSGGAGA  240
LVAVNAPDTG GSGASAETVA TKTADTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGK  300
TRKGRQGGYD KEDKAARAYD LAALKYWGPT TTTNFPVSNY EKELEEMKHM TRQEFVASLR  360
RSASPTWEMA SKDRKSCREQ GPLLGHIHLA VACNLLVTRV PCTHHVCLDY SSCSTELGIF  420
AAGTQEEAAE AYDIAAIKFR GLNAVTNFDM SRYDVKSILE SSALPIGGAA KRLKEAEAAS  480
AAAGVATTSA ASPRSSXXXX GGAAKRLKEA EAASAAAGVV GYDVGRIATQ LGDSAALAAY  540
GAHYHAAAWP TIAFQPAHAG AGAATLYHPY AQPLRGWCKQ EPDRTVIAAA HSLQELHHLN  600
LGAGVHDFFA VSGRAAMHGL GSVDNASLEH STGSNSVVYS GVGDSSGGGG YMMPVNAAPT  660
ATTTAMASHE QVQGGRTQGD QDDAKQPQMA YENYLVNAEA YGCGGRTPSW STPASAQPVA  720
AATSSNDMAG VGHGGAQILS VWNTLT
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03372.1.g00040.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033138e-58AP003313.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0035F12.
GenBankAP0149578e-58AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY0621808e-58AY062180.1 Oryza sativa ovule development aintegumenta-like protein BNM3 (BNM3) gene, complete cds.
GenBankCP0126098e-58CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682077.10.0AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A368REM70.0A0A368REM7_SETIT; Uncharacterized protein
STRINGSi000593m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.16e-79AP2 family protein