PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03357.1.g00040.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 516aa    MW: 56630.1 Da    PI: 9.2877
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03357.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.2e-094434772155
                                   HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                      Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                   + +yps++e+  LA+++gL+++q+ +WF N+R ++
  Zpz_sc03357.1.g00040.1.am.mk 443 EWPYPSETEKIALAQSTGLDQNQINNWFINQRKRH 477
                                   669*****************************885 PP
2ELK37.26.4e-13397418122
                           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                   ELK qLl+KYsgyL+sL+qEFs
  Zpz_sc03357.1.g00040.1.am.mk 397 ELKYQLLKKYSGYLSSLRQEFS 418
                                   9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.0E-19224268IPR005540KNOX1
PfamPF037902.1E-20225266IPR005540KNOX1
SMARTSM012563.4E-24272323IPR005541KNOX2
PfamPF037919.5E-21278321IPR005541KNOX2
SMARTSM011881.2E-7397418IPR005539ELK domain
PROSITE profilePS5121311.627397417IPR005539ELK domain
PfamPF037896.7E-10397418IPR005539ELK domain
PROSITE profilePS5007112.779417480IPR001356Homeobox domain
SuperFamilySSF466894.71E-19418492IPR009057Homeodomain-like
SMARTSM003896.8E-13419484IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-27422481IPR009057Homeodomain-like
CDDcd000862.40E-12429481No hitNo description
PfamPF059204.6E-16437476IPR008422Homeobox KN domain
PROSITE patternPS000270455478IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MNNACSRPRK KPCRSTRLSL SEYSTSISPP VSSPVRFDAR KGVATSTDAH RGPDCPLALA  60
HTFPFTVHSP SSNLINISLP STLSLPLPAA LHGHDRHYWC GEKREKLQSS PGPAGRLLCI  120
PNFSVRLASA RFWPVYFMDQ SFVNLGAGGC SSGASNSKPA APGSSSFLQL PLSSTTVAAP  180
AGVAYYGAPL TLLHQVAGPS PAASQSQSQY GRHAEMSMSP AKVGAVKAKI VAHPQYSALL  240
AAFLDCQKVG APPDLVEKLT ATAAKLDARP PPNRHEPRDP ELDQFMEAYC NMLAKYREEL  300
RGPIDEATEF IKRLEGQLDS ISGATATAAR LSLAGESLPG LRFHLSYGTV RSRVSSFRSS  360
LDLDGKSEGA GSSEDDMDAS GRGNEPPEID PRTEYKELKY QLLKKYSGYL SSLRQEFSKK  420
KKKGKLPKEA RQKLLHWWEL HYEWPYPSET EKIALAQSTG LDQNQINNWF INQRKRHWKP  480
SEDMPFVMME GFHPQNSAAF YLDGPFMADG MYRLGS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03357.1.g00040.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0940391e-163FP094039.1 Phyllostachys edulis cDNA clone: bphyem209e11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955415.11e-171homeobox protein rough sheath 1
SwissprotO650341e-148KNOSC_ORYSI; Homeobox protein knotted-1-like 12
SwissprotO804161e-148KNOSC_ORYSJ; Homeobox protein knotted-1-like 12
TrEMBLA0A368PV501e-170A0A368PV50_SETIT; Uncharacterized protein
STRINGPavir.Bb00225.1.p1e-168(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-84KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y, et al.
    Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
    EMBO J., 1999. 18(4): p. 992-1002
    [PMID:10022841]
  2. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  3. Nagasaki H,Sakamoto T,Sato Y,Matsuoka M
    Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
    Plant Cell, 2001. 13(9): p. 2085-98
    [PMID:11549765]
  4. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  5. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  6. Yin H, et al.
    SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
    Planta, 2013. 237(1): p. 15-27
    [PMID:22956125]