PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03347.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 547aa    MW: 60049.6 Da    PI: 9.9442
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03347.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.53.3e-08279311136
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkf 36 
                                   s+y+GV +++ +grW+A+I   +   g +k+ +lg++
  Zpz_sc03347.1.g00010.1.am.mk 279 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTY 311
                                   89****99**********99966...3.6*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.9E-11176263IPR001471AP2/ERF domain
PROSITE profilePS5103215.87176257IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-9176257IPR001471AP2/ERF domain
PRINTSPR003673.9E-5177188IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-7226258IPR016177DNA-binding domain
PRINTSPR003673.9E-5239259IPR001471AP2/ERF domain
PfamPF008472.6E-4279311IPR001471AP2/ERF domain
CDDcd000182.76E-16279369No hitNo description
SuperFamilySSF541714.58E-5279313IPR016177DNA-binding domain
SMARTSM003806.5E-14280373IPR001471AP2/ERF domain
PROSITE profilePS5103213.643280367IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-4280314IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-6341368IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-5341369IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MCMAKQRGSC WDRRPGGALP FTGPGARSSV VTDKRRRRSW TANQIEREIL EKEIGEGEAG  60
TPFPLLPPLL RSFGILPALQ TPTDPFSLSL SLSLSLHIFK TATSLGHHSW PPTFSPPSLS  120
LSTRAEMARP RKTIAAANST SNNAAVGDVD VRVKPKPRKR TRKSVPRESP SQRSSIYRGV  180
TRHRWTGRFE AHLWDKNSWS ETQNKKGKQG QSLLRELEAI ILQTGCLRAY DDEDAAARAY  240
DLAALKYWGP DTILNFPVPP KFIDRTLPQK SSGFSRGVSK YRGVARHHHN GRWEARIGRV  300
FGNKYLYLGT YARRTDVGAP TPLSKHSTRH LRCNAGLFVS ATQEEAAMAY DMAAIEYRGL  360
NAVTNFDLSR YIKWLRRGGA DSASFPASAQ NPQELPPPAD IDGVAFHPDD HHRGSERTEA  420
RFQLPARASL GHAPTTSALR LLLQSPKFKE MIARTAEAES STTSSSSSPS PPPPSPPQQQ  480
ELQAQVAKDG GGCASPQCSF PDDIQTFFGC EDVAGVGVGL GYADVEGLFF GDLAAYSSPA  540
FHFELDL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03347.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0396326e-61BT039632.1 Zea mays full-length cDNA clone ZM_BFc0035F11 mRNA, complete cds.
GenBankBT0551116e-61BT055111.1 Zea mays full-length cDNA clone ZM_BFc0006C10 mRNA, complete cds.
GenBankKJ7275886e-61KJ727588.1 Zea mays clone pUT5448 AP2-EREBP transcription factor (EREB143) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696557.11e-145PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D9XDV91e-149A0A0D9XDV9_9ORYZ; Uncharacterized protein
STRINGLPERR09G07570.11e-150(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-58AP2 family protein