PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03342.1.g00050.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 414aa    MW: 45704.3 Da    PI: 9.3451
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03342.1.g00050.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.6e-1576123148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT eEd  l++ v+  G g+W+  ar  g++Rt+k+c++rw++yl
  Zpz_sc03342.1.g00050.1.am.mk  76 KGPWTVEEDAVLAHHVAANGEGRWNELARAAGLRRTGKSCRLRWLNYL 123
                                   79********************************************97 PP
2Myb_DNA-binding42.81.2e-13129172146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg + + E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Zpz_sc03342.1.g00050.1.am.mk 129 RGDFAPREQLLILELHFRWGNR-WSRIAAHLP-GRTDNEVKNYWRT 172
                                   6778899***************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.57871127IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-1972125IPR009057Homeodomain-like
SuperFamilySSF466892.54E-2874170IPR009057Homeodomain-like
SMARTSM007177.3E-1375125IPR001005SANT/Myb domain
PfamPF002491.2E-1376123IPR001005SANT/Myb domain
CDDcd001672.35E-978123No hitNo description
Gene3DG3DSA:1.10.10.603.3E-21126176IPR009057Homeodomain-like
SMARTSM007172.2E-12128176IPR001005SANT/Myb domain
PROSITE profilePS5129415.36128178IPR017930Myb domain
PfamPF002498.7E-13129172IPR001005SANT/Myb domain
CDDcd001671.94E-9134172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MRRPKKRRKK LTKLSSSVRA ALEKGGRRRL VVATEVSDPS RSMDAMWMGA CDWSSAAASA  60
TSIEDEKAAA AAELRKGPWT VEEDAVLAHH VAANGEGRWN ELARAAGLRR TGKSCRLRWL  120
NYLRPGVRRG DFAPREQLLI LELHFRWGNR WSRIAAHLPG RTDNEVKNYW RTRVQKHARQ  180
LGCDVGSRRF RDVMRQHWMP RLVERIHADS GAAVSQSQPA TTASKQPSYH YIASNNCGSH  240
AKPCASPDAS CVTAGPSSPE SSHEAQFQTN SPIMDAAGAG YSSSTEQCQY GSGSGDMLDG  300
SWSELLARAS PGNADSTGLH DFEFGEIHTA VLNMTWSMVN YWSSVVNGLR SMLDPGRLCL  360
ESNGCDELDR RLCEIRSWKH ASNIHQLPAS LCVAGAVHHA RGVFDQMSDR NVVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-237317624126MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
119RRPKKRRKK
2310PKKRRKKL
348KKRRK
449KKRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03342.1.g00050.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9524381e-131EU952438.1 Zea mays clone 1280407 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817284.11e-115transcription factor JAMYB-like
TrEMBLA0A2S3HVZ61e-113A0A2S3HVZ6_9POAL; Uncharacterized protein
STRINGPavir.Eb01219.1.p1e-108(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.14e-71myb domain protein 112