PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03311.1.g00040.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 382aa    MW: 41857.1 Da    PI: 7.7036
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03311.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.2e-1464112148
                                   TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg+W++eEd +l   v+++G+  +W + +++ g++R++k+c++rw++yl
  Zpz_sc03311.1.g00040.1.am.mk  64 RGPWSQEEDAILRSFVQRFGNAgNWIALPQRAGLKRCGKSCRLRWLNYL 112
                                   89******************99*************************97 PP
2Myb_DNA-binding41.53.2e-13119161246
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   g +T eEd l++ +  + G++ W+ Ia++++ gRt++++k++w++
  Zpz_sc03311.1.g00040.1.am.mk 119 GGFTDEEDNLILSLYGEIGSK-WSVIASRLP-GRTDNDVKNYWNT 161
                                   569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.81259112IPR017930Myb domain
SuperFamilySSF466898.99E-2761159IPR009057Homeodomain-like
SMARTSM007171.8E-1063114IPR001005SANT/Myb domain
PfamPF002498.0E-1464112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-2265119IPR009057Homeodomain-like
CDDcd001679.09E-866112No hitNo description
PROSITE profilePS5129419.497113167IPR017930Myb domain
SMARTSM007172.6E-12117165IPR001005SANT/Myb domain
PfamPF002492.9E-12119161IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-22120166IPR009057Homeodomain-like
CDDcd001676.72E-10121163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MHSAAASFAP AFVLPLYIAA RARQSSERST YQQIIASGAR QLRRIVDQRA MGRSPCCDKA  60
RVKRGPWSQE EDAILRSFVQ RFGNAGNWIA LPQRAGLKRC GKSCRLRWLN YLRPELRHGG  120
FTDEEDNLIL SLYGEIGSKW SVIASRLPGR TDNDVKNYWN TKLKKRFFAA ADRKGTLPPP  180
PPPPPPPISR GDDGTAAVAT ESEPEYDRAP PDPSPTTPSL ANLDAAVVDN DDELLVKSEQ  240
LYSELMGLIE QQSAETSAME SLFTATSSTG TTPAVSSSSG SCNVWPAKDV QDSGLLSESI  300
SGLFDGDDVF GAADLMPAYS FQELLAASSY DEFTTVNQEL MLLRIVRCST SEVKKFVVAA  360
ATADERRKPR KKQETGRARV TC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24641667107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03311.1.g00040.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2413701e-135AK241370.1 Oryza sativa Japonica Group cDNA, clone: J065154C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008675095.11e-113transcription factor MYB30 isoform X2
TrEMBLA0A1D6NDK81e-109A0A1D6NDK8_MAIZE; R2R3MYB-domain protein
TrEMBLA0A3L6SJ651e-109A0A3L6SJ65_PANMI; Myb-related protein Zm38-like
STRINGGRMZM2G167829_P011e-112(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.12e-66myb domain protein 87