PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc03275.1.g00020.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 229aa MW: 25180.2 Da PI: 4.798 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.2 | 5.9e-16 | 12 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48 +g+WT+eEd lv +++q+G+++W+++++ Rt++++k++w+++l Zpz_sc03275.1.g00020.1.sm.mk 12 KGPWTPEEDIVLVSYIQQHGPRNWRAVPENTAiasylPQRTDNDIKNYWNTHL 64 79********************9987555444444444************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.374 | 7 | 68 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-22 | 8 | 68 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.9E-16 | 9 | 71 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-12 | 11 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-14 | 12 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.64E-14 | 14 | 64 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MGRPPCCENV KKGPWTPEED IVLVSYIQQH GPRNWRAVPE NTAIASYLPQ RTDNDIKNYW 60 NTHLKKKVKR LQTQPADSIQ TTPSNALSSL NYYSSGSTQH DFQGMQSLNN YPSTASIGSE 120 TTATTVSDLV QKWMMRPSPA LTVANYKIAM QEFQEDQAAA AVVCNDGHFV FNDDRSSSSS 180 GTMAPVMMGC SSTATFSLLE DWLLDDMQGQ AMDGIVGISG CCCADPIMF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc03275.1.g00020.1.sm.mk |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004979484.1 | 6e-94 | transcription factor MYB30 | ||||
Swissprot | B3VTV7 | 4e-34 | MYB60_VITVI; Transcription factor MYB60 | ||||
TrEMBL | A0A1E5V910 | 1e-95 | A0A1E5V910_9POAL; Myb-related protein 306 | ||||
STRING | Si026733m | 2e-93 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74650.1 | 5e-33 | myb domain protein 31 |
Publications ? help Back to Top | |||
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