PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03270.1.g00050.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 439aa    MW: 48378.4 Da    PI: 9.701
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03270.1.g00050.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.82.6e-501042481128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk................kvka.eekewyfFskr 64 
                                   +ppGfrFhPtdeel+ +yLkkkv+ ++++l +vi+e+d++k+ePwdL+                 ++ +  ++ewyfFs++
  Zpz_sc03270.1.g00050.1.am.mk 104 VPPGFRFHPTDEELLYYYLKKKVSFEPIDL-DVIREIDLNKLEPWDLKGagansqdlfmahadrcRIGTgPQEEWYFFSHK 183
                                   69****************************.9***************94588999999888887644443556******** PP

                           NAM  65 dkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   dkky+tg+r+nrat++g+Wkatg+dk+++    g+ +gl+ktLvfy+grap+g+kt+W+mheyrl
  Zpz_sc03270.1.g00050.1.am.mk 184 DKKYPTGTRTNRATAAGFWKATGRDKAIFLGnAGRRIGLRKTLVFYTGRAPHGKKTEWIMHEYRL 248
                                   *****************************9767888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-54101268IPR003441NAC domain
PROSITE profilePS5100556.56104268IPR003441NAC domain
PfamPF023655.0E-27105248IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MHAWRGIAGD LHAAPVNGHT HPPIFSGDRP AAPRALSRPA ARAALFVCPG WLVSAGFRSL  60
ASNACARAPA SGRYGVVAVR RRRRRHCAAV MLDIWILDGS PLSVPPGFRF HPTDEELLYY  120
YLKKKVSFEP IDLDVIREID LNKLEPWDLK GAGANSQDLF MAHADRCRIG TGPQEEWYFF  180
SHKDKKYPTG TRTNRATAAG FWKATGRDKA IFLGNAGRRI GLRKTLVFYT GRAPHGKKTE  240
WIMHEYRLDE DNVEVPEDGW VVCRVFKKKS IQRSFEQPGM ALGDKEELQT LTPVDQKQGR  300
LRNQLMHGGF PAFDPFMHLP PLASPDATPG SSTSAFMSGT PALAMNPLEM GSSFQYMAKL  360
TTVLAGANAG EVLLSGGDRI GAVADWSILD NLLASRQNLD QLFHGKLGGA AVEAPHHYQQ  420
QLPLLMETGA SSLPRLPLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-4710027013167NO APICAL MERISTEM PROTEIN
1ut4_B8e-4710027013167NO APICAL MERISTEM PROTEIN
1ut7_A8e-4710027013167NO APICAL MERISTEM PROTEIN
1ut7_B8e-4710027013167NO APICAL MERISTEM PROTEIN
4dul_A8e-4710027013167NAC domain-containing protein 19
4dul_B8e-4710027013167NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17984RRRRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03270.1.g00050.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0639438e-97AK063943.1 Oryza sativa Japonica Group cDNA clone:001-123-E07, full insert sequence.
GenBankAK1012808e-97AK101280.1 Oryza sativa Japonica Group cDNA clone:J033033C18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827212.11e-162NAC domain-containing protein 76-like
SwissprotQ5Z6B66e-98NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBLA0A1E5VY611e-163A0A1E5VY61_9POAL; NAC domain-containing protein 76 (Fragment)
STRINGPavir.Ab01037.1.p1e-158(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34613781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-83NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]