PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03253.1.g00010.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 259aa    MW: 28000 Da    PI: 7.6901
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03253.1.g00010.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.000492172363655
                                     S-STCHHHHHHHHHHHHHHH CS
                             HLH  36 kKlsKaeiLekAveYIksLq 55 
                                     +  s a++L +Ave+I+ Lq
  Zpz_sc03253.1.g00010.1.sm.mkhc 217 RQTSTADMLDLAVEHIRGLQ 236
                                     4499***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.18E-4211240No hitNo description
Gene3DG3DSA:4.10.280.105.5E-4215250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-5216252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MNPPPDRRGS ARYGGCSAAF PFVVDPTEGP AGASVRVFFP APEGGGQEPS SSAERQQRYG  60
ADISLGHGMH RYHHARVGGG SDVHQATNSY NKKMNSPMNL PRQGTLTQIS EDGVPHLTEN  120
MHPIGHPEEN ITANNVARSF SGGFSIGSWE DSNSIAVSNP SSKAGMHNND DIIAALRNYE  180
LQFGATEANQ KMQQDQVPFR VRAKRGCATH PRSIAERQTS TADMLDLAVE HIRGLQSELQ  240
VLKEEKGKCS CRGKPPSVN
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03253.1.g00010.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825346.11e-100transcription factor bHLH129-like
TrEMBLA0A2S3I7V06e-99A0A2S3I7V0_9POAL; Uncharacterized protein
STRINGSi010513m9e-97(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141882026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-19bHLH family protein