PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03239.1.g00040.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 481aa    MW: 52206.7 Da    PI: 10.6203
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03239.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.6e-10230275148
                                   TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+W++eEd l+ + ++++G g +W + +   +   ++ +c+srw++yl
  Zpz_sc03239.1.g00040.1.am.mk 230 KGKWSKEEDRLIRNHIEKHGIGrSWQALSTLQP---CGRSCRSRWLNYL 275
                                   79******************999**********...***********97 PP
2Myb_DNA-binding36.41.2e-11282325247
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   g++T+ Ed+++ +   ++G+  W+ I++ ++ gRt+  +k++w++ 
  Zpz_sc03239.1.g00040.1.am.mk 282 GNFTPAEDKIICEMYSKMGSC-WSVISAQLP-GRTDLAVKNYWNST 325
                                   89*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.86E-23228322IPR009057Homeodomain-like
PROSITE profilePS500909.303228275IPR017877Myb-like domain
SMARTSM007171.5E-8229277IPR001005SANT/Myb domain
PfamPF002495.3E-9230275IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-16231282IPR009057Homeodomain-like
CDDcd001678.80E-8232275No hitNo description
PROSITE profilePS5129419.027276330IPR017930Myb domain
SMARTSM007174.0E-12280328IPR001005SANT/Myb domain
PfamPF002492.2E-10282325IPR001005SANT/Myb domain
CDDcd001672.85E-8283326No hitNo description
Gene3DG3DSA:1.10.10.601.7E-21283329IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MRSPHDLPPE HPAPARGAVP GPRRTPDREL NSSAEPDTEE TRLRRPSESE RDGRAREGLG  60
IRRTREGKEG RGLQGVGVLD VSFEHLERVP VHLPHHPPPP PPRPPVPPFS SNKPGPVGKI  120
LPLVPCYDAA TGTEDCTPDG DETSRAPRSR CGGGWWRGGG EWWACLGFEV GEETVRWRKQ  180
ARQHRGNRGT RLSRGIYAPG GDPDERGGNL SPAGGRVQYT SRGGAMVMKK GKWSKEEDRL  240
IRNHIEKHGI GRSWQALSTL QPCGRSCRSR WLNYLRPGLK HGNFTPAEDK IICEMYSKMG  300
SCWSVISAQL PGRTDLAVKN YWNSTLKKRF RPAARTAAFA RRRPHPSPTA STSDAGTPAR  360
DLQLVIHSDE SSTAGSSCAQ PILPSSPTSV KAVHPLGPVG AGREPIEAVP VRVSAPVRTD  420
VGGAASDDAN GAATTGKAWS DRWDGHGHHL RAHVTPPSGL HGPGAGLHMR VRRHPQLLAL  480
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-2022832925127MYB TRANSFORMING PROTEIN
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03239.1.g00040.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122282638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.16e-39myb domain protein 87