PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03191.1.g00010.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ARF
Protein Properties Length: 666aa    MW: 72250.4 Da    PI: 8.0446
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03191.1.g00010.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.7e-24123224199
                                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS
                              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 
                                     f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+++
  Zpz_sc03191.1.g00010.1.sm.mkhc 123 FAKTLTQSDANNGGGFSVPRYCAETIlpkldyrADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQK 199
                                     89****************************996555555..8999********************************** PP

                                     T--TT-EEEEEE-SSSEE..EEEEE-S CS
                              B3  73 gLkegDfvvFkldgrsefelvvkvfrk 99 
                                     +L +gD++vF   +++ +el+v+++r+
  Zpz_sc03191.1.g00010.1.sm.mkhc 200 KLVAGDSIVFL--RTEHGELCVGIRRA 224
                                     ***********..55999*******97 PP
2Auxin_resp87.72.3e-29279347168
                      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsd 68 
                                     aa+ a+  ++FevvY+Prast+eFvvk++ v++a+++++++GmRfkmafetedss++++ +Gt+++v+ 
  Zpz_sc03191.1.g00010.1.sm.mkhc 279 AASLAARCQPFEVVYYPRASTPEFVVKAALVQNAMRIQWCPGMRFKMAFETEDSSRISWfMGTIASVQV 347
                                     67889999**********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-36114226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-29118226IPR015300DNA-binding pseudobarrel domain
CDDcd100176.86E-22121223No hitNo description
PROSITE profilePS5086312.929123225IPR003340B3 DNA binding domain
PfamPF023624.7E-22123224IPR003340B3 DNA binding domain
SMARTSM010191.9E-21123225IPR003340B3 DNA binding domain
PfamPF065075.7E-24279347IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MKEAAEERGL DPQLWHACAG GMVQMPPVRS RVYYFPQGHA EHAQGGGGGG GAADLAAAVG  60
PRALPALVLC CVAGVRFLAD PETDEVFAKI RLVPVAPGEA DFRGEHDELG GDPAEARDKL  120
PSFAKTLTQS DANNGGGFSV PRYCAETILP KLDYRADPPV QTVLAKDVHG EVWKFRHIYR  180
GTPRRHLLTT GWSTFVNQKK LVAGDSIVFL RTEHGELCVG IRRAKRVSFG GMECMSGWNA  240
PGYGAFSAFM KEEENRLMKG AGGYTRGRGK VKIADVVDAA SLAARCQPFE VVYYPRASTP  300
EFVVKAALVQ NAMRIQWCPG MRFKMAFETE DSSRISWFMG TIASVQVTWD EPDLLQNVKC  360
VNPWLVELVS SIPPIHLGPF SPPRKKLRVP QHPDFPFDGQ LLNPIFHGYP LGPSNSPLCC  420
FPDNAPAGIQ GARHAQFGLS LTDHQLNRLG PGLFQGGGFN RLDTITPSSR ISKGFVISSS  480
PVHESVSCLL TIGTPQGTEK SDDRKKPHIM LFGKPILTEQ QMNSRGSSET LSPNTTGNSS  540
SNGSVAKAAN VSDGSGSSIC VGFTSQGHEA SELGLEAGHC KLADMFRIEK AEIISQLRYH  600
DAAGAVKHAG DEPFSDFMKV VRRLTIIEGS EGRLQKPLME CVVERTYDVC SIVKKTSFGS  660
LRKDVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-641037151392Auxin response factor 5
4ldy_A2e-641337122357Auxin response factor 1
4ldy_B2e-641337122357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03191.1.g00010.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982839.10.0auxin response factor 22
SwissprotQ9AV470.0ARFV_ORYSJ; Auxin response factor 22
TrEMBLK4A6M00.0K4A6M0_SETIT; Auxin response factor
STRINGSi034525m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]