PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03183.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 710aa    MW: 76442.3 Da    PI: 8.7768
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03183.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.53.7e-1468116148
                                   TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg+W++eEd +l   v+++G+  +W + +++ g++R++k+c++rw++yl
  Zpz_sc03183.1.g00030.1.am.mk  68 RGPWSKEEDAILRSFVQRFGNAgNWIALPQKAGLKRCGKSCRLRWLNYL 116
                                   89******************99*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.56763120IPR017930Myb domain
SuperFamilySSF466893.84E-2066156IPR009057Homeodomain-like
SMARTSM007171.5E-1067118IPR001005SANT/Myb domain
PfamPF002493.1E-1368116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-2269123IPR009057Homeodomain-like
CDDcd001671.30E-770116No hitNo description
SMARTSM007179.5E-4121162IPR001005SANT/Myb domain
PROSITE profilePS512948.487121164IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-13124163IPR009057Homeodomain-like
CDDcd001673.07E-6125160No hitNo description
Gene3DG3DSA:3.40.367.209.9E-7666709No hitNo description
SuperFamilySSF530675.74E-6666710No hitNo description
PfamPF037272.0E-6666709IPR022673Hexokinase, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
GO:0016773Molecular Functionphosphotransferase activity, alcohol group as acceptor
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MLGQLAQRLS AGAALARFKH REERSPNRAN PGPCSPPSAF CCRLLRSRSV DERAMGRSPC  60
CDKAWVKRGP WSKEEDAILR SFVQRFGNAG NWIALPQKAG LKRCGKSCRL RWLNYLRPEL  120
RHGGFTDEED NLILSLYGEI GSKLPGRTDN EVKNYWNTKL KKRYLAAAKG EETPPPPPSP  180
RFGDSIAAAA TESEPQDDLP LPPPPTTTPS LANLITAIAD EDGDLLVKSE QLYSELMGLI  240
EQQSTSTNAG TSTGESLTAC SSSGASPVVR STGSGSCHVW PMDLQDTALP SESIGSLFDA  300
YSLQDLLATS YDEYATVNQE LMLTAVRETS TLASRLAPWA HKEATLETTG EHRHTGHVGD  360
ACHSVAAVVR LYILGCLMAG SCPPAAPRTR GGQGTLRARA ATPHSSSYSY KYVTSQPPPS  420
PTKSPPPTGQ PKDLGTMRRE GRQRGWVFAV DRSLVDPEGK PRRRAVLVEG AANGGFVRAP  480
RRPTNHSKPA VGRAYKSMIG GGGAGAAGSG SGSGKGARKF KHGEVKTYYQ EIDGDYDDED  540
AVDDELVYLD IFGLQEYIVY DPWPSEALTT AFSRWSVVAA EADRATTQKA TMRKLTGLAA  600
AAAVVAAALA AAVVKRRRLR EATCWARADA MLRDLEERCA VPAERLRLVA DAMAAEMRAG  660
LDANDEVIAQ RAARLAAAGI YGILKKLGRN TAGPAEQRTV ISVDGGVYKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-19681637107B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1614618KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03183.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2413702e-95AK241370.1 Oryza sativa Japonica Group cDNA, clone: J065154C10, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-55myb domain protein 36