PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03153.1.g00040.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 93aa    MW: 10702.8 Da    PI: 9.0072
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03153.1.g00040.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding331.4e-101461347
                                  SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                                   W+   d+l+ +a + + ++   +W+ +ar mg +++ ++++ ++qk+
  Zpz_sc03153.1.g00040.1.sm.mk 14 EWSRSQDKLFERALAVYDKDtpeRWHNVARFMGGTKSVEEVRRHYQKL 61
                                  7*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.342762IPR017877Myb-like domain
SMARTSM007171.3E-91164IPR001005SANT/Myb domain
SuperFamilySSF466893.83E-121370IPR009057Homeodomain-like
CDDcd001677.85E-81461No hitNo description
PfamPF002493.6E-81461IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MTSNNRRSSP SPSEWSRSQD KLFERALAVY DKDTPERWHN VARFMGGTKS VEEVRRHYQK  60
LEEDVARIES GEVPFHWYGG AAPPPVTTVQ RGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-2015781173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03153.1.g00040.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818796.15e-40protein RADIALIS-like 3 isoform X1
SwissprotQ1A1732e-26RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2T7DJA11e-38A0A2T7DJA1_9POAL; Uncharacterized protein
STRINGPavir.J13204.1.p1e-40(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-24RAD-like 6