PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03153.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 315aa    MW: 35065.7 Da    PI: 8.6754
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03153.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.96.4e-10132181147
                                   TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                                   r  WT++ d+l+ +a + + ++   +W+ Iar +g g++  ++k ++q +
  Zpz_sc03153.1.g00030.1.am.mk 132 RSQWTKQQDKLFEQALAVYDKEtpdRWHNIARAVGGGKSVDEVKTHYQLL 181
                                   679*****************99*************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.2E-9131184IPR001005SANT/Myb domain
PROSITE profilePS500906.818132182IPR017877Myb-like domain
PfamPF002496.6E-7132180IPR001005SANT/Myb domain
SuperFamilySSF466895.91E-12133189IPR009057Homeodomain-like
CDDcd001673.19E-6135182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MLVQPTVERD ARTGQLDDGR NRICSVSPWI TWPLARSKDR GSEPDRLDYS RHQTESGTRV  60
FPQAVLAMKS LFLGDRWHSF WSCTLRLTDA LFSSLYRVTH HERTTLQGTS YPAGRPGPIS  120
SLHISMASMS MRSQWTKQQD KLFEQALAVY DKETPDRWHN IARAVGGGKS VDEVKTHYQL  180
LVHDVGRIEK GEVAFPAYRC PGVGSMPMGG YEADRKSCPL PSSSFPASSP NIGEHHPSLM  240
TSFNTTSAAN PNPTKSIVLW RACVEATMAI CFTGTFLQGL VLGVSTSQCQ VKASILHDWD  300
SSHTRLASIT QWRDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-201352061180RADIALIS
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03153.1.g00030.1.am.mk
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0078582e-38AC007858.1 Oryza sativa (japonica cultivar-group) chromosome 5 clone BAC 10A19I, complete sequence.
GenBankAC1209882e-38AC120988.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0017N18, complete sequence.
GenBankAK2415282e-38AK241528.1 Oryza sativa Japonica Group cDNA, clone: J065171E20, full insert sequence.
GenBankAP0149612e-38AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126132e-38CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8363542e-38CT836354.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA043L05, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3446934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.12e-25RAD-like 6