PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03070.1.g00080.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 279aa    MW: 31666.1 Da    PI: 6.0808
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03070.1.g00080.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS50.44e-16150216167
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalpps 67 
                                   l++lL++cA+av+++d +la+ lL ++++++s dgd +qRla++++e+L+arla+ +s++y +l+++
  Zpz_sc03070.1.g00080.1.am.mk 150 LRSLLIHCAQAVAADDRQLASDLLRKIRQHSSADGDCTQRLAFCLLEGLEARLAGIGSKVYYKLTAK 216
                                   689********************************************************99888765 PP
2GRAS31.22.8e-10231279156205
                          GRAS 156 eeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVn 205
                                   e  ee+g+rLa++A+e++vpfe++  +++r+e++++e+L+++ +E++++n
  Zpz_sc03070.1.g00080.1.am.mk 231 EGNEEVGKRLADYANEFKVPFEYQG-ISSRFETIQIEDLNIEDDEVVIIN 279
                                   67799********************.7*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098512.215124279IPR005202Transcription factor GRAS
PfamPF035141.4E-13150216IPR005202Transcription factor GRAS
PfamPF035149.8E-8231279IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MLMEDVDERV GLHQGEDVLQ AAEKPFYDIL AQPLTSTGRS SRFGFPALQL RRGVEEAKGF  60
DKLVTDHRKD PYTRDLNDLG GRSSVMTSCE IIRNKKFDRV LICRDLENFE ETLNLREMMT  120
RMNPPKGQGK RPSQHKLKGK KQLEKEVVDL RSLLIHCAQA VAADDRQLAS DLLRKIRQHS  180
SADGDCTQRL AFCLLEGLEA RLAGIGSKVY YKLTAKRISI DVPRPGIDTL EGNEEVGKRL  240
ADYANEFKVP FEYQGISSRF ETIQIEDLNI EDDEVVIIN
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03070.1.g00080.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680797.17e-89scarecrow-like protein 9
TrEMBLA0A2S3H7973e-70A0A2S3H797_9POAL; Uncharacterized protein
STRINGSb09g001150.14e-72(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-24GRAS family protein