PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02955.1.g00030.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 404aa MW: 42904.2 Da PI: 8.7965

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02955.1.g00030.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.8	2.1e-53	24	152	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ew+fFs+rd+ky++g r+nra++sg Zpz_sc02955.1.g00030.1.sm.mk 24 LPPGFRFHPTDEELVVHYLKKKAASMPLPV-TIIAEVDLYKFDPWELPAKASFGEHEWFFFSPRDRKYPNGARPNRAATSG 103 79**************************.89***********9989999********************** PP NAM 82 yWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatg+dk+++++ ++e+vg+kk Lvfy+g+ pkg kt+W+mheyrl Zpz_sc02955.1.g00030.1.sm.mk 104 YWKATGTDKPIFASggSREKVGVKKALVFYRGKPPKGIKTNWIMHEYRL 152 *********9777788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.06E-62	20	191	IPR003441	NAC domain
PROSITE profile	PS51005	61.295	24	191	IPR003441	NAC domain
Pfam	PF02365	1.7E-27	25	152	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MESTDSSSGS APPQRKQPGP APHLPPGFRF HPTDEELVVH YLKKKAASMP LPVTIIAEVD 60 LYKFDPWELP AKASFGEHEW FFFSPRDRKY PNGARPNRAA TSGYWKATGT DKPIFASGGS 120 REKVGVKKAL VFYRGKPPKG IKTNWIMHEY RLADAASSVN TSRPPPGSGG GGKAAASLRL 180 DDWVLCRIYK KVNKYGVGEH LQRSMDGGED CVEDAVGAYR LSHAATGDMT IASGGENYTK 240 LLHHNGNNFL DGLLTVDDGS LTAGASSLNH LAAVATESPA VTKQLLAPPG STPFKWLDTS 300 AKAILPPAKT CHGFSRDTTD GGTSSLSSPA ERNHLAVPGS SAGDIGASSG GAVAVPTILN 360 PFGMQQGAAY LHHHASFLGT SMPPETTSCA FQNPYQPAGV NWNP

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MESTDSSSGS APPQRKQPGP APHLPPGFRF HPTDEELVVH YLKKKAASMP LPVTIIAEVD  60
LYKFDPWELP AKASFGEHEW FFFSPRDRKY PNGARPNRAA TSGYWKATGT DKPIFASGGS  120
REKVGVKKAL VFYRGKPPKG IKTNWIMHEY RLADAASSVN TSRPPPGSGG GGKAAASLRL  180
DDWVLCRIYK KVNKYGVGEH LQRSMDGGED CVEDAVGAYR LSHAATGDMT IASGGENYTK  240
LLHHNGNNFL DGLLTVDDGS LTAGASSLNH LAAVATESPA VTKQLLAPPG STPFKWLDTS  300
AKAILPPAKT CHGFSRDTTD GGTSSLSSPA ERNHLAVPGS SAGDIGASSG GAVAVPTILN  360
PFGMQQGAAY LHHHASFLGT SMPPETTSCA FQNPYQPAGV NWNP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-71	23	195	14	172	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269\|PubMed:17124321}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00058	PBM	Transfer from AT1G61110	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02955.1.g00030.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802635.1	1e-178	NAC transcription factor NAM-B2-like
Swissprot	A0SPJ9	1e-159	NAM2_HORVV; NAC transcription factor NAM-2
TrEMBL	A0A3L6QQR5	1e-180	A0A3L6QQR5_PANMI; NAC transcription factor NAM-B2
STRING	Pavir.J08552.1.p	1e-176	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7572	36	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	1e-90	NAC domain containing protein 25

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]