PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02914.1.g00050.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 560aa    MW: 60311.8 Da    PI: 8.353
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02914.1.g00050.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.71.9e-31299355259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     dDgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkve+++ d+++ ei+Y+g+Hnh+
  Zpz_sc02914.1.g00050.1.am.mkhc 299 DDGYNWRKYGQKVVKGSDCPRSYYKCTYPNCPVKKKVEHAE-DGQISEIIYKGKHNHQ 355
                                     8**************************************99.***************8 PP
2WRKY105.92.1e-33455513159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k++er+++dpk+v++tYeg+H he
  Zpz_sc02914.1.g00050.1.am.mkhc 455 LDDGYRWRKYGQKVVKGNPHPRSYYKCTFAGCNVRKHIERASSDPKAVITTYEGKHSHE 513
                                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-28293357IPR003657WRKY domain
SuperFamilySSF1182903.01E-25296357IPR003657WRKY domain
SMARTSM007745.0E-34298356IPR003657WRKY domain
PfamPF031062.5E-24299355IPR003657WRKY domain
PROSITE profilePS5081123.078299357IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-36441515IPR003657WRKY domain
SuperFamilySSF1182909.02E-29447515IPR003657WRKY domain
PROSITE profilePS5081136.839450515IPR003657WRKY domain
SMARTSM007745.3E-39455514IPR003657WRKY domain
PfamPF031061.3E-25456512IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
EEENRLSLSL GSAAPATMSA RPPPPPRPRL ALPPRSNSES LFTGAGDASP GPLTLASALF  60
SSDTGGGTSS STGTGATSFT ELLIGSLAPP PPSLAPQQQH EAERGRGGVA RAGPALSVAP  120
PASSASAASV FTVPPGLSPS GLFDSPGLRF SPAMSRNQLF LQIFTSIRRW LISSPRSPSA  180
SLDPRAVGPD LHRLCVLPVL DLIPGGFGMS HQQALAQVTA QASHSPHRMF DYMKQQSFSA  240
AATSSEAHQH MNSAANVAGT SEMRMVTENN ENASFQSAEA SQRYQVNAPV NAVVDKPADD  300
GYNWRKYGQK VVKGSDCPRS YYKCTYPNCP VKKKVEHAED GQISEIIYKG KHNHQRPPNK  360
RGKDGNPSAA EQIEQSNDAT SGLSGAKRDP EAMYGMSEQL SGLSEGDDME DGESRPQEVD  420
DGDNENKRRT IQSSSQRTLS EPKIIVQTTS EVDLLDDGYR WRKYGQKVVK GNPHPRSYYK  480
CTFAGCNVRK HIERASSDPK AVITTYEGKH SHEPPVGRGS NQNAGMSQQK GQNNQASLSR  540
TDFSNTNQMQ MGFLQFKREE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-38299515877Probable WRKY transcription factor 4
2lex_A9e-38299515877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02914.1.g00050.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147897.20.0uncharacterized protein LOC100281507
TrEMBLB6SYC50.0B6SYC5_MAIZE; SPF1-like DNA-binding protein
STRINGGRMZM2G076657_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-103WRKY DNA-binding protein 3