PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02907.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family DBB
Protein Properties Length: 299aa    MW: 31106.2 Da    PI: 8.0618
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02907.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.73.7e-06545639
                      zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                                  C+ +++ e+   C  +++ lC+ C  + H+        H+v
  Zpz_sc02907.1.g00010.1.am.mk  5 CDSCGRAEAAVLCCADEVALCRRCDAAVHSAnklagrhHRV 45
                                  *****************************668888895655 PP
2zf-B_box19.61.9e-06170201837
                      zf-B_box   8 eHeekelqlfCedCqqllCedClleeHkg..H 37 
                                   +H+ek   +fC +++ llC+ C ++ H    H
  Zpz_sc02907.1.g00010.1.am.mk 170 LHPEKTGYFFCLEDRALLCRPCDVALHAAsvH 201
                                   5999999*******************955663 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.599147IPR000315B-box-type zinc finger
CDDcd000215.57E-6547No hitNo description
SMARTSM003361.7E-7547IPR000315B-box-type zinc finger
CDDcd000212.90E-5171209No hitNo description
SMARTSM003360.037171210IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MKIGCDSCGR AEAAVLCCAD EVALCRRCDA AVHSANKLAG RHHRVALLPF NPAPPSVVVE  60
DGDGAAAGGH PVCDICKVRI KPRTSSSALY CCATIGPVSG PATGQSRAGQ IDLRQAANEE  120
TAAACIVMGG NDGARPHTSW GSAWLLALPP PSNGPACRKL RRPKSAAKIL HPEKTGYFFC  180
LEDRALLCRP CDVALHAASV HASAHRRFLF TGVRVGDVQS LSRHQDAPVA KPPAPVSPSS  240
SSANSGFPSS GSDPASIVSG NVRSSPVRVT AAAEEKAAEE GFGRETWPWS EIFPDGGDM
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02907.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3583838e-53AK358383.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1075F08.
GenBankFP0918918e-53FP091891.1 Phyllostachys edulis cDNA clone: bphylf050h06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805930.16e-27B-box zinc finger protein 23-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10240.12e-16DBB family protein