PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02889.1.g00040.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Nin-like

Protein Properties

Length: 390aa MW: 42146.8 Da PI: 4.407

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02889.1.g00040.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	59.1	8.1e-19	301	351	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++ d++ yF+lp+++A+k+L+vc TvLK R++G+kRWP+R i+++ Zpz_sc02889.1.g00040.1.sm.mk 301 TSKLERRDIACYFHLPMEEACKKLQVCGTVLKGVSRKFGLKRWPYRTINKI 351 678999******************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.88	291	372	IPR003035	RWP-RK domain
Pfam	PF02042	3.0E-17	304	351	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MAANGDNNDH GAEGQWLFDP LLVPDDLDDV MHLLNVPADD DQYSPPPPAS TQNVATDGSY 60 SGNSLDGTAM AGNVGAYSSV DSTAHPAAVT AMAGGSSTSA HQDVGASSSY VHQGVLDCTG 120 CQMLREIMHI KGLETTKLCI HGVPGLFYHA TLEVYHANNE GLALEPTHQS FVDFIARDYA 180 WVKHYLIEYA QKRAAGGYTV VHDSTSDFLD VLCTSMAGVC VHADDNGDVA APAEAENGVA 240 VEEQIVPADA GDAVQPMIAQ EEILPDEPGP SELRNDAVDD QEEQVVQPHA RSTLAIQRER 300 TSKLERRDIA CYFHLPMEEA CKKLQVCGTV LKGVSRKFGL KRWPYRTINK IDNKIAKLRE 360 NGDGSAESMA EIQKLTDSRR EIIDGPSEEI

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MAANGDNNDH GAEGQWLFDP LLVPDDLDDV MHLLNVPADD DQYSPPPPAS TQNVATDGSY  60
SGNSLDGTAM AGNVGAYSSV DSTAHPAAVT AMAGGSSTSA HQDVGASSSY VHQGVLDCTG  120
CQMLREIMHI KGLETTKLCI HGVPGLFYHA TLEVYHANNE GLALEPTHQS FVDFIARDYA  180
WVKHYLIEYA QKRAAGGYTV VHDSTSDFLD VLCTSMAGVC VHADDNGDVA APAEAENGVA  240
VEEQIVPADA GDAVQPMIAQ EEILPDEPGP SELRNDAVDD QEEQVVQPHA RSTLAIQRER  300
TSKLERRDIA CYFHLPMEEA CKKLQVCGTV LKGVSRKFGL KRWPYRTINK IDNKIAKLRE  360
NGDGSAESMA EIQKLTDSRR EIIDGPSEEI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02889.1.g00040.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021321666.1	7e-84	uncharacterized protein LOC8084238
TrEMBL	A0A368QD38	3e-96	A0A368QD38_SETIT; Uncharacterized protein
STRING	Si025242m	2e-86	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8055	29	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	4e-10	RWP-RK domain-containing protein