PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc02875.1.g00020.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 88aa MW: 9873.48 Da PI: 10.9165 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77 | 1.4e-24 | 36 | 86 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+ nrqvtfskRr+g++KKA+ L + Cda++ vi+f +tg+ly++s+ Zpz_sc02875.1.g00020.1.am.mk 36 KRIENEANRQVTFSKRRAGVFKKAKGLATFCDAQIGVIVFTNTGQLYDFSN 86 79***********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.932 | 28 | 88 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-22 | 28 | 87 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.7E-30 | 28 | 87 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-22 | 30 | 50 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.6E-22 | 37 | 84 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-22 | 50 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-22 | 65 | 86 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
LWVLSPPLSF LSPVRKPAGD QCPESRLMVR GKTVLKRIEN EANRQVTFSK RRAGVFKKAK 60 GLATFCDAQI GVIVFTNTGQ LYDFSNSW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269|PubMed:17704216, ECO:0000269|PubMed:24876250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc02875.1.g00020.1.am.mk |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the micro RNA miR824. {ECO:0000269|PubMed:18579782}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641670.1 | 2e-25 | MADS-box transcription factor 23-like | ||||
Swissprot | A2RVQ5 | 5e-22 | AGL16_ARATH; Agamous-like MADS-box protein AGL16 | ||||
TrEMBL | A0A0D3GGC5 | 2e-25 | A0A0D3GGC5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0A9B3 | 3e-25 | A0A0E0A9B3_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0E1J2 | 2e-25 | A0A0E0E1J2_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0P0WWA7 | 4e-25 | A0A0P0WWA7_ORYSJ; Os06g0347700 protein | ||||
TrEMBL | A2YCP0 | 3e-25 | A2YCP0_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1Q293 | 2e-25 | I1Q293_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q5Z5L9 | 3e-25 | Q5Z5L9_ORYSJ; MADS-box protein-like | ||||
STRING | Pavir.Da00991.1.p | 1e-27 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP35661 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.2 | 2e-24 | AGAMOUS-like 16 |
Publications ? help Back to Top | |||
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