PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc02852.1.g00070.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 130aa MW: 14431.5 Da PI: 9.6116 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.3 | 8.5e-19 | 28 | 72 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eEd++++++++ lG++ W++Ia +++ gRt++++k++w+++ Zpz_sc02852.1.g00070.1.sm.mkhc 28 RGNFTDEEDDIIIKLHQILGNK-WSLIAGRLP-GRTDNEIKNYWNTH 72 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.321 | 1 | 22 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-13 | 8 | 35 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.91E-24 | 8 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 28.012 | 23 | 77 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-17 | 27 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.7E-17 | 28 | 72 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.16E-14 | 30 | 73 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.0E-25 | 36 | 74 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MLEAAGLQRC GKSCRLRWIN YLRPDLKRGN FTDEEDDIII KLHQILGNKW SLIAGRLPGR 60 TDNEIKNYWN THIKRKLLAR GIDPKTHRPL SVTAAGAPPS SGGHSSDEDY SMSVPNLGGI 120 DLNLSLSLPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-24 | 9 | 77 | 40 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc02852.1.g00070.1.sm.mkhc |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light, UV, cold, drought, ethylene, jasmonic acid (JA), salicylic acid (SA), abscisic acid (ABA), cadmium (CdCl(2)), high salt (NaCl), and cytokinins. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM156905 | 9e-86 | AM156905.1 Zea mays mRNA for transcription factor MYB8 (myb8 gene). | |||
GenBank | EU963911 | 9e-86 | EU963911.1 Zea mays clone 274019 hypothetical protein mRNA, complete cds. | |||
GenBank | HQ858692 | 9e-86 | HQ858692.1 Zea mays clone UT1148 ZmMYB8 transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977234.1 | 2e-65 | myb-related protein Zm38 | ||||
Swissprot | O49608 | 4e-53 | MYB32_ARATH; Transcription factor MYB32 | ||||
TrEMBL | K3YA56 | 4e-64 | K3YA56_SETIT; Uncharacterized protein | ||||
STRING | Si011098m | 7e-65 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 1e-54 | myb domain protein 3 |