PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02851.1.g00010.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family CO-like
Protein Properties Length: 265aa    MW: 28474.5 Da    PI: 4.7196
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02851.1.g00010.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.49.1e-06847841
                        zf-B_box  8 eHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                                     +e+ +++  C+ +   lC++C   +H+       H++ p
  Zpz_sc02851.1.g00010.1.sm.mkhc  8 VCEHAPASVTCRADAAALCASCDADIHSAnplarrHERLP 47
                                    599999*********************6688888898877 PP

2CCT69.96.6e-24176219144
                             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                     Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  Zpz_sc02851.1.g00010.1.sm.mkhc 176 REARLMRYREKRKSRRFEKTIRYASRKAYAETRPRIKGRFAKRT 219
                                     9*****************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.6E-9148IPR000315B-box-type zinc finger
CDDcd000212.85E-7848No hitNo description
PROSITE profilePS501198.532948IPR000315B-box-type zinc finger
PfamPF062036.7E-18176218IPR010402CCT domain
PROSITE profilePS5101716.876176218IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MASDEKSVCE HAPASVTCRA DAAALCASCD ADIHSANPLA RRHERLPVAP FYGALADAPK  60
PFAASSAVAD DDRSNEAEAA SWLLPEPEHE QNDGPSADVF FADSDTYLDL EFARSMDDIK  120
AIGVQNCPPD MDLTGAKLFY PDHSLNHSVS SSEAAVVPDA AAGAAPAPVV SRGWEREARL  180
MRYREKRKSR RFEKTIRYAS RKAYAETRPR IKGRFAKRTS AGSGAEAEED RDEEMYSSAA  240
AAVAALMTPA TGDADYGIDG VVPTF
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02851.1.g00010.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825843.11e-133zinc finger protein CONSTANS-LIKE 3-like
SwissprotQ9SK531e-49COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBLA0A1E5UW041e-136A0A1E5UW04_9POAL; Uncharacterized protein
STRINGAC233888.1_FGP0021e-126(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-31CONSTANS-like 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tripathi P,Carvallo M,Hamilton EE,Preuss S,Kay SA
    Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. 172-177
    [PMID:27999181]