PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc02851.1.g00010.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | CO-like | ||||||||
Protein Properties | Length: 265aa MW: 28474.5 Da PI: 4.7196 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.4 | 9.1e-06 | 8 | 47 | 8 | 41 |
zf-B_box 8 eHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 +e+ +++ C+ + lC++C +H+ H++ p Zpz_sc02851.1.g00010.1.sm.mkhc 8 VCEHAPASVTCRADAAALCASCDADIHSAnplarrHERLP 47 599999*********************6688888898877 PP | |||||||
2 | CCT | 69.9 | 6.6e-24 | 176 | 219 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++ Zpz_sc02851.1.g00010.1.sm.mkhc 176 REARLMRYREKRKSRRFEKTIRYASRKAYAETRPRIKGRFAKRT 219 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 5.6E-9 | 1 | 48 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.85E-7 | 8 | 48 | No hit | No description |
PROSITE profile | PS50119 | 8.532 | 9 | 48 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 6.7E-18 | 176 | 218 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.876 | 176 | 218 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MASDEKSVCE HAPASVTCRA DAAALCASCD ADIHSANPLA RRHERLPVAP FYGALADAPK 60 PFAASSAVAD DDRSNEAEAA SWLLPEPEHE QNDGPSADVF FADSDTYLDL EFARSMDDIK 120 AIGVQNCPPD MDLTGAKLFY PDHSLNHSVS SSEAAVVPDA AAGAAPAPVV SRGWEREARL 180 MRYREKRKSR RFEKTIRYAS RKAYAETRPR IKGRFAKRTS AGSGAEAEED RDEEMYSSAA 240 AAVAALMTPA TGDADYGIDG VVPTF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc02851.1.g00010.1.sm.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825843.1 | 1e-133 | zinc finger protein CONSTANS-LIKE 3-like | ||||
Swissprot | Q9SK53 | 1e-49 | COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3 | ||||
TrEMBL | A0A1E5UW04 | 1e-136 | A0A1E5UW04_9POAL; Uncharacterized protein | ||||
STRING | AC233888.1_FGP002 | 1e-126 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2191 | 32 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 1e-31 | CONSTANS-like 5 |
Publications ? help Back to Top | |||
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