PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02816.1.g00070.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 424aa    MW: 45291.5 Da    PI: 4.8669
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02816.1.g00070.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.26.4e-11288344155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  Zpz_sc02816.1.g00070.1.sm.mk 288 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 344
                                   57*******************5444.2455535555.7799999*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-8288344IPR001471AP2/ERF domain
CDDcd000183.12E-17288353No hitNo description
SuperFamilySSF541713.33E-14288353IPR016177DNA-binding domain
SMARTSM003803.3E-18289358IPR001471AP2/ERF domain
PROSITE profilePS5103217.108289352IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-11289352IPR001471AP2/ERF domain
PRINTSPR003671.5E-6290301IPR001471AP2/ERF domain
SMARTSM003806.5E-4359403IPR001471AP2/ERF domain
PROSITE profilePS510328.755371397IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-5372399IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-6372398IPR001471AP2/ERF domain
PRINTSPR003671.5E-6379399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MASANNWLGF SLSGQENAQP NQDTSSAIDI SGGSDFYGLP TQQASDGHIG VDHASYGIME  60
AFNRGPQETQ GEETAARQPL YRLMICSAYD WNMRGMDYNG GASELSMLVG SSGGGGSGKR  120
AVEESEPKLE DFLGGNSFVS EQDQSGGYLF SGIPMASSTN SNSGSNTMEL SMIKTWLRNN  180
QVPQPQPPAP HQPQPEEMST DASANSFGCS DSQGRNGTVA TGSSQSLALS MSTGSHLPML  240
VGGGTASGAA SESTSSENKR ANGAMDSPGG AVEAVPRKSI DTFGQRTSIY RGVTRHRWTG  300
RYEAHLWDNS CRREGQSRKG RQGGYDKEDK AARAYDLAAL KYWGTTTTTN FPYCIAQTPP  360
AWEMASKDRE STEEEAAEAY DIAAIKFRGL NAVTNFDMSR YDVKSILESS TLPVGGAARR  420
LKDA
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02816.1.g00070.1.sm.mk
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557320.0EU955732.1 Zea mays clone 1543867 protein BABY BOOM 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824559.10.0AP2-like ethylene-responsive transcription factor BBM1 isoform X2
TrEMBLA0A2T7F8Y80.0A0A2T7F8Y8_9POAL; Uncharacterized protein
STRINGGRMZM2G366434_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.13e-47AP2 family protein