PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc02808.1.g00050.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 393aa MW: 42077.2 Da PI: 8.9431 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.2 | 4.1e-18 | 221 | 271 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k +r++lg+++ta eAa a+++a+ +l+g Zpz_sc02808.1.g00050.1.am.mk 221 RYRGVRQRP-WGKYAAEIRDPAQ--KGARVWLGTYDTAVEAACAYDRAAFRLRG 271 7********.**********944..44*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-11 | 221 | 271 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-22 | 221 | 280 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.0E-37 | 221 | 285 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.47E-28 | 221 | 280 | No hit | No description |
PROSITE profile | PS51032 | 23.894 | 221 | 279 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-31 | 221 | 280 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-13 | 222 | 233 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-13 | 261 | 281 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MFSFEGTQGR CRGFSHSAAC GRPLTTKRVS ERTSEEAVAA CARAVEPTTP GRLASDVSAT 60 TSPWVPGFVR RTRKPPRSTV MSPYLLAAAS YIAVGGRVPQ PLFNADARNA APAGPCSSPP 120 PTPQRQVSSS HLKHLDLIRA HLLEDGHDVA AGAVSSDSDG STASPSPSPP GRRQVPALSV 180 TLPPRPATVV VHQQWAAAPS LQVRHQQGQE HGCYEEDDFR RYRGVRQRPW GKYAAEIRDP 240 AQKGARVWLG TYDTAVEAAC AYDRAAFRLR GSKAILNFPN EVAFGAAARW AAPSAASLNN 300 SYAAAAGNKR TRSPEQSLQW EAAESLREVK KERVQEPAAS CDYCVAVAPA PASGGADFFW 360 EEVEELKGTL CSLPLLSPLS PHPHVAFPQL SVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-28 | 220 | 285 | 4 | 69 | ATERF1 |
3gcc_A | 6e-28 | 220 | 285 | 4 | 69 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc02808.1.g00050.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC079890 | 6e-88 | AC079890.13 Oryza sativa chromosome 10 BAC OSJNBb0089A17 genomic sequence, complete sequence. | |||
GenBank | AC084763 | 6e-88 | AC084763.4 Oryza sativa chromosome 10 BAC OSJNBa0027P10 genomic sequence, complete sequence. | |||
GenBank | AP014966 | 6e-88 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY341826 | 6e-88 | AY341826.1 Oryza sativa (japonica cultivar-group) AP2 domain-containing protein AP28 mRNA, complete cds. | |||
GenBank | CP012618 | 6e-88 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796155.1 | 4e-84 | ethylene-responsive transcription factor ERF105-like | ||||
TrEMBL | A0A3L6SDV4 | 9e-92 | A0A3L6SDV4_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ib02259.1.p | 5e-82 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 1e-31 | ERF family protein |