PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02800.1.g00060.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 463aa    MW: 51292.9 Da    PI: 6.7322
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02800.1.g00060.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.2e-17164210148
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                     +g WT+eEd +lv++v+q+G + W+ Ia+ ++ gR +kqc++rw+++l
  Zpz_sc02800.1.g00060.1.sm.mkhc 164 KGQWTPEEDRKLVKLVEQFGLRKWSCIAQILP-GRVGKQCRERWHNHL 210
                                     799*****************************.*************97 PP
2Myb_DNA-binding52.21.4e-16218258345
                                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
                 Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                      W+ eEd  l++a+k+ G++ W+ Ia++++ gRt++++k++w+
  Zpz_sc02800.1.g00060.1.sm.mkhc 218 IWSDEEDMVLIQAHKEVGNK-WAEIAKRLP-GRTENSIKNHWN 258
                                     6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.487159214IPR017930Myb domain
SuperFamilySSF466892.88E-31161257IPR009057Homeodomain-like
SMARTSM007171.2E-14163212IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-29165217IPR009057Homeodomain-like
PfamPF139211.2E-17167223No hitNo description
CDDcd001676.80E-15167210No hitNo description
PROSITE profilePS5129419.544215265IPR017930Myb domain
SMARTSM007172.5E-16215263IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-21218263IPR009057Homeodomain-like
CDDcd001672.45E-13219261No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MLYFSPFQEN DAGRQQHCFS IFSRTIYIAA SEISMDFSCF QPHGGSCSHM PFDSCAQPNG  60
RCELHPVDHP FEGSIGECAA AGSAAVSFAT FNDLGHQYYS ERESKRPVVS QVGSFLPLLT  120
PKTEASHLMG CGLGSYKAYE MNGRFVTRSR KASSNSRKKA NVVKGQWTPE EDRKLVKLVE  180
QFGLRKWSCI AQILPGRVGK QCRERWHNHL RPNIKKDIWS DEEDMVLIQA HKEVGNKWAE  240
IAKRLPGRTE NSIKNHWNAT KRRQFARRRS RSSKGPKSGT LLQSYIKSLG IGPTSRKNVL  300
AAAPLAAQLP PALPPPSPAF PVPKQAKRDS EHSPLNENNC GEVSLSFEEL LAPICDEFSV  360
DMCDGLFDAN DEVFQVCGID DDFVDMNCIF NHLDYACNSG DHGMDMEMAW DDVDALADCV  420
GLEMESGSSS AARVETAAQV KKEIDLVEMM AATTKKSAGA EDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-471622642104C-Myb DNA-Binding Domain
1msf_C5e-471622642104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02800.1.g00060.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796038.11e-170transcription factor MYB41-like
TrEMBLA0A1E5V2V31e-180A0A1E5V2V3_9POAL; Transcription factor MYB98
STRINGPavir.J02497.1.p1e-172(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-59myb domain protein 98