PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02800.1.g00010.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 307aa    MW: 33658.7 Da    PI: 5.846
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02800.1.g00010.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.21.1e-072442772154
                                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                     k +yp++e++++L +++gL+ +q+ +WF N+R +
  Zpz_sc02800.1.g00010.1.sm.mkhc 244 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 277
                                     569*****************************87 PP
2ELK30.76.8e-11198219122
                             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                     ELKh+L+++Y+++L+++++E++
  Zpz_sc02800.1.g00010.1.sm.mkhc 198 ELKHELKQGYREKLVDIREEIM 219
                                     9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-193276IPR005540KNOX1
PfamPF037901.5E-163572IPR005540KNOX1
SMARTSM012562.3E-2587142IPR005541KNOX2
PfamPF037919.7E-1795141IPR005541KNOX2
PfamPF037899.7E-7198219IPR005539ELK domain
SMARTSM011883.8E-4198219IPR005539ELK domain
PROSITE profilePS5121310.196198218IPR005539ELK domain
PROSITE profilePS5007111.758218281IPR001356Homeobox domain
SMARTSM003893.3E-10220285IPR001356Homeobox domain
SuperFamilySSF466897.27E-16220284IPR009057Homeodomain-like
CDDcd000862.67E-11221282No hitNo description
Gene3DG3DSA:1.10.10.602.3E-24225282IPR009057Homeodomain-like
PfamPF059203.2E-18238277IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MAFQYTDHTL GMDAAAAAAG FGAAGVGGGG WEREKAAIAA HPLYERLLEA HVACLRVATP  60
VDQLPRIDAQ IAARPPPMAA AAAAAAVGGA QSGGEELDLF MTHYVLLLCS FKEQLQQHVR  120
VHAMEAVMAC WELEQTLQSL TGASPGEGTG ATMSDDEDNQ VDSESNMFDG NEGSDGMGFG  180
PLMLTEGERS LVERVRQELK HELKQGYREK LVDIREEIMR KRRAGKLPGD TASTLKAWWQ  240
AHSKWPYPTE EDKARLVQET GLQLKQINNW FINQRKRNWH SNPASSSSDK SKRKRNTAGD  300
GNAEQSW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274294RKRNWHSNPASSSSDKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02800.1.g00010.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659775.10.0homeobox protein knotted-1-like 11 isoform X1
SwissprotQ0E3C31e-177KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLA0A3L6DGP40.0A0A3L6DGP4_MAIZE; Homeobox protein knotted-1-like 11
TrEMBLK7VF270.0K7VF27_MAIZE; Knotted related homeobox2
STRINGPavir.J37473.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-144KNOTTED1-like homeobox gene 3