PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02770.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 458aa    MW: 50511.4 Da    PI: 10.1238
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02770.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.6e-16298347255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa a+++a++ + g
  Zpz_sc02770.1.g00020.1.am.mk 298 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAAGAYDEAARIMCG 347
                                   69******9.**********8.....334**********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.67E-27297355No hitNo description
Gene3DG3DSA:3.30.730.109.5E-32298355IPR001471AP2/ERF domain
SMARTSM003802.5E-35298361IPR001471AP2/ERF domain
PROSITE profilePS5103220.06298355IPR001471AP2/ERF domain
PfamPF008473.7E-9298346IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-19298355IPR016177DNA-binding domain
PRINTSPR003677.0E-10299310IPR001471AP2/ERF domain
PRINTSPR003677.0E-10321337IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MGDRLSKEFV SYDSICLLGR IGKGPRHLQA GSQWIGQSHR PAIGQTPRSR PHGVGRGHVE  60
MPSAFRWATR GNDLLNQCTC EYTGSVPSYG RSTRIPRALG PAPPCRHVRR EDKPAIRSPC  120
GFDHSRSVVP ATTRRTRRAC VWDRIRKRRT QLALYARTIL ASKVRQPSAD LEPQSPDSAP  180
TTTTTTVRDR DGTNEDREKD TLHPTETRGW HAYQHHARGI AATGEHVLSM QRALEFLECE  240
YSILHGRFVL VLGSDLPKAA AAGGTSLLPL ARSSVFLVRH CFAPGRLVPQ EAERIKQRYR  300
GVRQRHWGSW VSEIRHPLLK TRIWLGTFET AEDAAGAYDE AARIMCGPRV RTNFPSGDAA  360
LSFLSPALVA KLHRFNLASV QAVQQARGDK ADACMTTAPA VLPRAAMPAG SASMGIAPAP  420
SAAGPRWSGG EGVFLEEQYV DQMIEELLDS NFVMETSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-14297355463ATERF1
3gcc_A1e-14297355463ATERF1
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02770.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9681126e-70EU968112.1 Zea mays clone 314589 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.11e-33ERF family protein