PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02752.1.g00040.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 336aa    MW: 35614.9 Da    PI: 9.1914
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02752.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.81.3e-17163196134
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                   Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Zpz_sc02752.1.g00040.1.am.mk 163 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 196
                                   *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.2E-16157208IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-12157198No hitNo description
Gene3DG3DSA:3.30.50.101.6E-14161196IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.268161193IPR000679Zinc finger, GATA-type
CDDcd002021.82E-14162199No hitNo description
PfamPF003202.4E-15163196IPR000679Zinc finger, GATA-type
PROSITE patternPS003440163188IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MSAIYMSQLS TALPLMEGDH HHQGHFQDFT LPKDPPILFP FMIGSSSSGD SGLSYGSPDH  60
HLMSQKQAML EPGHMIGGSL AACVFTAPFP TVESIRDRDD MIGGGPIEAA GAGNWTPPAK  120
MRITRKASAD PGAGGMAVKK PRRRAQAYED MSSPTNLGVI RVCSDCNTTK TPLWRSGPCG  180
PKSLCNACGI RQRKARRAMM ASAGAVSAES FRAATATSSD AAAMAVHLKV KKEKRAHVDR  240
SLPFKKRCKV VQDHAAVPVA PVRTADKTAA EVADSALSGG LVENIELISW SRPSPSQPAT  300
TACRSFLPAP ALPVQHDEIT DAAMLLMTLS CGLVRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02752.1.g00040.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0336792e-53BT033679.1 Zea mays full-length cDNA clone ZM_BFc0123C20 mRNA, complete cds.
GenBankBT0645952e-53BT064595.1 Zea mays full-length cDNA clone ZM_BFc0188D02 mRNA, complete cds.
GenBankEU9555552e-53EU955555.1 Zea mays clone 1536888 GATA transcription factor 20 mRNA, complete cds.
GenBankKJ7280512e-53KJ728051.1 Zea mays clone pUT6197 C2C2-GATA transcription factor (GATA29) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812836.11e-136putative GATA transcription factor 22
SwissprotQ6YW481e-64CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLA0A1E5VZ481e-141A0A1E5VZ48_9POAL; Uncharacterized protein
STRINGPavir.Db01250.1.p1e-130(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.13e-20GATA family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]