PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc02731.1.g00040.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 821aa MW: 88366.7 Da PI: 9.0066 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.3 | 6.4e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv +v+++G+g+W++++ g+ R+ k+c++rw +yl Zpz_sc02731.1.g00040.1.am.mk 14 KGPWTPEEDLVLVSYVQEHGPGNWRAVPTNTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.8 | 1.7e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++l++++ +lG++ W++Ia++++ Rt++++k++w+++l Zpz_sc02731.1.g00040.1.am.mk 67 RGNFTDQEEKLIIHLQVLLGNR-WAAIASYLP-ERTDNDIKNHWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.468 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.02E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.95E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.024 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-23 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.22E-11 | 69 | 112 | No hit | No description |
ProDom | PD125774 | 7.0E-24 | 732 | 811 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.8E-27 | 752 | 804 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.9E-20 | 753 | 802 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.361 | 754 | 803 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 821 aa Download sequence Send to blast |
MGRPPCCDKV GVKKGPWTPE EDLVLVSYVQ EHGPGNWRAV PTNTGLMRCS KSCRLRWTNY 60 LRPGIKRGNF TDQEEKLIIH LQVLLGNRWA AIASYLPERT DNDIKNHWNT HLKKKLKKMQ 120 AGESGGGDQD GVRVSESAGA GDRVGGEKRP TVHKGQWERR LQTDIHTARQ ALREALSLEP 180 SPPAKMAPLP TPAGSATYAS SAENIARLLE GWLRPGSGCG KGPETSGSTS TTGTTQQRPQ 240 CSGEGAASAS ASHSGGTTAM AVQTPECSTE TSKMVGAAGA GAPPAFSMLE NWLLDDGLAH 300 GELGLIDVVP LGDPSMARCT GAGQWDCHGD ACMFLLLLHG YARVKQSQPQ EKIGKEKSES 360 KEQRNKRPGR PGRAECNAMR PWKRTGTGFN AGSVGCRFCR APLSFSPCLL SPACSQEDSG 420 RPSPGRHCPP APCIMQACGG TPNLIQSSWQ AEELRVMGLN AEQKGHRRGV NARPTHDPAR 480 QLRPYTVYSY YSAASEESRA GSSFIIQFSA LLCLFSFTMN VNVRLGGSNG LRNVCVRASG 540 RRGKEGRTHA VEGQWRVPSA HLVGGLNAPA LPAPSLIDLK ALSPLITAAP LRSRNGMELN 600 GPSEADAGDG IRRRRDGETS APPTDKRART YCCRPAGSAR SIDRNSRGAV GVRSGTVRSI 660 LSDRIEAIGA RYERPAVASP TRRISPVSHD DVGGGGGDSY LPVVHSEQGL HSPCAETRLW 720 LAGWEEEGKL TMKRLLILRR CEPIVRFTCC SVRYGECRRN HAATTGGYSV DGCREFIAEG 780 EEGTGGALKC AACGCHRSFH RRVQVYEVSW DYAASDSSST E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 7e-26 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 7e-26 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc02731.1.g00040.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951914 | 1e-150 | JF951914.1 Aegilops tauschii clone TaMYB31 R2R3-MYB protein mRNA, complete cds. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47600.1 | 3e-92 | myb domain protein 94 |