PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zpz_sc02699.1.g00060.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 604aa MW: 66881.2 Da PI: 10.6319 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.8 | 1.2e-08 | 225 | 271 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 WTteE + + +a ++ + +W++ a++++ ++t ++ ++++++ Zpz_sc02699.1.g00060.1.am.mk 225 TWTTEENKVFEKALALIDRNapdRWEKMASMLP-RKTVADVMNHYNDL 271 7*****************99*************.***********986 PP | |||||||
2 | Myb_DNA-binding | 42.7 | 1.3e-13 | 332 | 376 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E++l++++ +++G g W+ Ia ++ ++Rt+ q+ s+ qky Zpz_sc02699.1.g00060.1.am.mk 332 PWTEDEHKLFLQGLRKYGRGYWRNIALHFVTTRTPTQVASHAQKY 376 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.521 | 221 | 275 | IPR017884 | SANT domain |
SMART | SM00717 | 2.2E-7 | 222 | 274 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.39E-10 | 224 | 278 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.00E-6 | 225 | 271 | No hit | No description |
Pfam | PF00249 | 4.9E-6 | 225 | 271 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-4 | 225 | 271 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.295 | 325 | 381 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-10 | 325 | 376 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.87E-16 | 327 | 381 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-11 | 329 | 379 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 1.6E-15 | 329 | 379 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 2.09E-9 | 332 | 377 | No hit | No description |
Pfam | PF00249 | 8.4E-12 | 332 | 376 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 604 aa Download sequence Send to blast |
MNKSAVDTSP ARGRDSYLAN ALPRGGRGMV RDSEGFVDGG SNRGRRTPRR PLDEPNPPKR 60 DTPPEMDVPA AASVERSVPE YGRRMDPLVA AATVQERALS RSLGGELRLE RPLSPPRRQN 120 PITSIHSRAF SSRPATVELE YNSGHLGIHP ELDTSLLYST PTPHSASLFS LFRLLRHQPA 180 QVPVAKMMAE TWTQMLLPTT GLWFSGQSCC PWPDRHAGGG IGGDTWTTEE NKVFEKALAL 240 IDRNAPDRWE KMASMLPRKT VADVMNHYND LENDVGFIEA GLVSFPHYSS SPSPPSSGFT 300 LDHWDGSDGG FRRGCGLKRG RGPGQERRKG VPWTEDEHKL FLQGLRKYGR GYWRNIALHF 360 VTTRTPTQVA SHAQKYFIRL QSGGKDKRRP SIHDTTTANL SLPNDDHGNI SPSPSSALNT 420 ASNPTGGADQ FGALTDVKPF IPPFPGVAHP YTNQAFDEGF GSSLVSLVGG LPAWFRIQDR 480 SAMNHLAACG SAVSPWTVSP LHLFRVEAPG DEVRHRRSRQ QASRQSASRV ACITDRIWRW 540 CCLSLMSRSG WGRRGQALLP TWSRQHRVVE RGRHDKRRRR GWVVVAVQCG WRVETRSSGG 600 HSTG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-12 | 223 | 291 | 8 | 76 | RADIALIS |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Zpz_sc02699.1.g00060.1.am.mk |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2274 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G58900.1 | 3e-65 | Homeodomain-like transcriptional regulator |