PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc02647.1.g00070.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 242aa MW: 26087.8 Da PI: 10.764 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 95.8 | 6.8e-30 | 20 | 163 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atk 79 lppGfrF+Ptdeelv +yL++k+ g +l++++vi+ v d+y ++Pwd+p +++ e yfF+ r + r++ + Zpz_sc02647.1.g00070.1.am.mk 20 LPPGFRFKPTDEELVLQYLRRKALGVPLPAADVITVVrDLYGLDPWDIP---GSSDGEKYFFAIRPAAGVDRLRAKTgG-A 96 79*********************************999***********...4467899*****999887666655531.1 PP NAM 80 ...sgyWkatgkdkevlsk....kgelvglkktLvfy...........kgrapkgektdWvmheyrl 128 sg+Wk gk+++v+ ++ lvg k+ L+f +++a g t Wvmheyrl Zpz_sc02647.1.g00070.1.am.mk 97 mpaSGRWKPEGKERPVVLPrpcgGSLLVGAKRALAFAprrrgkkstnkQASAAAGLTTGWVMHEYRL 163 3459*************9989877778**********9998887776556788888*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-37 | 16 | 190 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 40.77 | 20 | 190 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.1E-19 | 21 | 163 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MERAPVLVRH AGGVATLRQL PPGFRFKPTD EELVLQYLRR KALGVPLPAA DVITVVRDLY 60 GLDPWDIPGS SDGEKYFFAI RPAAGVDRLR AKTGGAMPAS GRWKPEGKER PVVLPRPCGG 120 SLLVGAKRAL AFAPRRRGKK STNKQASAAA GLTTGWVMHE YRLATALLHK NGCGLAEAEG 180 EWVVCRVFRR SRQQQQPRRR PAAVPASDGT AQRHTMPPSL SAASSASSCV TDGSDQEEEA 240 SS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-22 | 19 | 196 | 14 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc02647.1.g00070.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004974022.1 | 2e-92 | NAC domain-containing protein 18 | ||||
TrEMBL | K3YJI9 | 4e-91 | K3YJI9_SETIT; Uncharacterized protein | ||||
STRING | Si014408m | 6e-92 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11818 | 31 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 2e-28 | NAC domain containing protein 47 |