PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02615.1.g00070.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 411aa    MW: 43486.7 Da    PI: 7.8229
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02615.1.g00070.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.12.7e-19331365135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  Zpz_sc02615.1.g00070.1.sm.mk 331 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 365
                                   *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.11325361IPR000679Zinc finger, GATA-type
SMARTSM004013.4E-18325379IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.28E-14328388No hitNo description
Gene3DG3DSA:3.30.50.102.1E-15329363IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.91E-15330387No hitNo description
PROSITE patternPS003440331356IPR000679Zinc finger, GATA-type
PfamPF003202.9E-17331365IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MDAMKSNAFP PEEAAEEAAN AAALGERDGF SVEDLLDLEE FGEPDKDETD HQDAAPPPAA  60
DETEENSPGD DSQPSSMVTF ELPPPPPEMV DLPFDGPSYV RKGGGFRESS VVGSAPSGKK  120
AFNIRSGVLQ AHDVEEELEW VSRIMDDSLS EVPPPAQPRA VAGAAVQAAR PPLAQRMPYD  180
SAYRALPRAP PGPPRAPTVC ALSTEALVPV KAKRSKRSRS SAWSMSGASL FSDSASSSST  240
ATTSSCSSSS ASFSPFFLLD SPPPFGFPDF EGYPHFLPPP AQARKSSKHG KGSKHKPKKR  300
GRKPKHAPQL TGAAAASAAA ASLVAQGERR CSHCGVQKTP QWRAGPEGAK TLCNACGVRY  360
KSGRLLPEYR PACSPTFVSS IHSNSHRKVL EMRRKKEAGL LGTAAPAVAS F
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02615.1.g00070.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9471361e-89EU947136.1 Zea mays clone 328769 mRNA sequence.
GenBankEU9554321e-89EU955432.1 Zea mays clone 1531924 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151060.11e-129uncharacterized protein LOC100284693
TrEMBLA0A0A9D1L51e-132A0A0A9D1L5_ARUDO; Uncharacterized protein
STRINGGRMZM2G404973_P031e-123(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.28e-41GATA transcription factor 5