PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02606.1.g00070.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 807aa    MW: 84769.2 Da    PI: 10.0128
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02606.1.g00070.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.41.6e-08207250344
                                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
                 Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                                      W++eEd  l+ a++++G g+W+ I  + +   +Rt  q+  rw
  Zpz_sc02606.1.g00070.1.sm.mkhc 207 TWSKEEDVDLAAAIQKYGEGNWEIILDKCNfrSTRTSDQLSQRW 250
                                     7***************************************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-10199252IPR009057Homeodomain-like
PROSITE profilePS5129410.311200259IPR017930Myb domain
SuperFamilySSF466898.61E-11203262IPR009057Homeodomain-like
SMARTSM007171.3E-6204256IPR001005SANT/Myb domain
PfamPF002492.5E-7207250IPR001005SANT/Myb domain
CDDcd116602.25E-14208255No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    Send to blast
MAATTAPAAG MGKGKRKRPL SEDDVYLILH RYAPATILTA LQEVAEHAQG RRIDWKALVG  60
KSATGITSAR EYQMLWRHFA YQHELAESID AGSSPLGDDS DLECELEPVP NPSKEVLSEA  120
SSLAKILISG SSHEQASGHR VNLETSAQNS ANGKIVRVPS DKQLAQNQRL TNVSGPISNS  180
KQTSQTGPSP DPLDANGASK KKKKIKTWSK EEDVDLAAAI QKYGEGNWEI ILDKCNFRST  240
RTSDQLSQRW ALISKRPGLS KPATTKQVSI TSSEERMATR KALSMAVDYN PCTRKPSAVR  300
LGAQQFSSQH TSTVFGTTIP EIKSAAAPFA APRQAPVPIQ APVTMPLPVT VQVLAPVQQA  360
QQAPAQVPPP KAPNASNKTR NNSKKQVVPQ NPPVVSCSIQ AAAIAAGGRI ATPTAAANHL  420
KATQSKNAVH IKTRVAVSSK SSTCSKGSNI VVEPRTQIGG AEHIELSNTA ATISAPSILL  480
THAAQQILDI SEVSAANPPG PPSGAHFTDT KKALSASAVP ASCDSEEQDD DDTICMVTME  540
DLFPEDANQP ESVNPKEKQP EAIGPRERQQ DSIDLKEKQQ GVLGLKTKQP ETKNLRVEGI  600
VDSKDADMLE FDQFVASQGG TSVKMDYLDT SNTVRSAPTT QGSTGSQKKQ LKSVPAAGRG  660
NSIYSAAPSS GKKTKVSHPV SLMPTGTPWV NVSAHSTAQN KPVEKKTAAP ATSSGQNLLM  720
KKQAVNTKGN QTPNSVAVGV TSVAPGSSMA STVVNPPGSS QAGTVVNGAS KANPPGSSQT  780
STLVNGSSKV NPPGPSQASK VVSGVSK
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02606.1.g00070.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952835.10.0nascent polypeptide-associated complex subunit alpha, muscle-specific form
TrEMBLK3YPR80.0K3YPR8_SETIT; Uncharacterized protein
STRINGSi016260m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.13e-44MYB_related family protein