PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02588.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 242aa    MW: 25515.9 Da    PI: 9.8735
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02588.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.32.8e-11741191255
                           AP2  12 rgrWvAeIrdpse..ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   + rW A     ++  +g  ++ +r++lg+f++ae Aa+a++ a+++l+g
  Zpz_sc02588.1.g00010.1.am.mk  74 WERWQAA---AKTeqGGkkRNrARVWLGTFDSAEAAARAYDVAARNLRG 119
                                   99***88...444444475448*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.4561127IPR001471AP2/ERF domain
SMARTSM003804.0E-1467133IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-1372128IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.2E-1873127IPR001471AP2/ERF domain
PfamPF008471.7E-874119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MVGEATAPVR CAVWESSNTG GVARFLTAPP LAATEECLRR CTARHGARLL IAGAALVRST  60
YSSGQHTQRP LTEWERWQAA AKTEQGGKKR NRARVWLGTF DSAEAAARAY DVAARNLRGP  120
LARTNFPVVP RLPLTSSRPR GLVVAPAQAT APTCSSSSTV ESSSGPRVGP KTAAAPRKRV  180
VVVLPRPAAP DVGCHSDCAS STSVMDDGDD ASTVRSRVPF DLNLAPSMDG DLDAGTDLRL  240
CL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18692GKKRNRA
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02588.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0544742e-38BT054474.1 Zea mays full-length cDNA clone ZM_BFc0081A23 mRNA, complete cds.
GenBankJX4699522e-38JX469952.1 Zea mays subsp. mays clone UT3214 AP2-EREBP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822790.18e-33ethylene-responsive transcription factor 7-like
TrEMBLA0A0A8Y8Q64e-41A0A0A8Y8Q6_ARUDO; Uncharacterized protein
STRINGPavir.Ga00187.1.p6e-35(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51232758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.12e-07ethylene responsive element binding factor 3