PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02581.1.g00080.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 397aa    MW: 44412 Da    PI: 9.9019
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02581.1.g00080.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.44.2e-073203522355
                                   SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                      Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                   r +++ e++ LA+++gL+++q+ +WF N+R ++
  Zpz_sc02581.1.g00080.1.am.mk 320 RRLQELEKAALADSTGLDTKQINNWFINQRKRH 352
                                   667888999*********************885 PP
2ELK34.93.3e-12258279122
                           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                   ELK++Ll+KYsgyL+sL+ E+s
  Zpz_sc02581.1.g00080.1.am.mk 258 ELKNRLLNKYSGYLSSLWRELS 279
                                   9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-155599IPR005540KNOX1
PfamPF037902.1E-185797IPR005540KNOX1
PfamPF037891.8E-9258279IPR005539ELK domain
SMARTSM011889.5E-7258279IPR005539ELK domain
PROSITE profilePS5121310.51258278IPR005539ELK domain
SuperFamilySSF466893.85E-12280357IPR009057Homeodomain-like
SMARTSM003897.7E-6280359IPR001356Homeobox domain
CDDcd000861.64E-9281355No hitNo description
Gene3DG3DSA:1.10.10.601.5E-22283355IPR009057Homeodomain-like
PfamPF059208.2E-11298351IPR008422Homeobox KN domain
PROSITE profilePS500719.491312355IPR001356Homeobox domain
PROSITE patternPS000270330353IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MEPPLSLPAT SSKSTTTRFD LSSDQRASTP PAEVPKPPPA ASEPSRQSNN EGGSEILKAK  60
IVSHHLYPAI LRAFIDCRKV GAPPEVVGRL SAVASEVEMN SNDRQEQPED PELDQFMDSK  120
YPSAHRQNFG AFVVWVACVV WPTTAPSRNG SSRSSACSRR RPGIACRIAK GYSPWQRQRL  180
CSSCSSSHLL LHALHRSNRL ADRAELHYLL SCPVERAHQP SDMNDKSYEL GGGSSNEDEH  240
ETGGDVDDLP KTSGEDKELK NRLLNKYSGY LSSLWRELSR KKKKGKLPRE ARQKLLHWWQ  300
MHYRWPYPSV HLRPLMILSR RLQELEKAAL ADSTGLDTKQ INNWFINQRK RHWKPGPPPK  360
LALNYRLGGA SSSTAHHAAL HAEGQYFTGG SAYSRGP
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02581.1.g00080.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0906835e-39AC090683.7 Oryza sativa chromosome 3 BAC OSJNBa0035I24 genomic sequence, complete sequence.
GenBankAC1163695e-39AC116369.5 Oryza sativa chromosome 3 BAC OSJNBb0113I20 genomic sequence, complete sequence.
GenBankAP0149595e-39AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126115e-39CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464092.16e-69homeobox protein knotted-1-like 4
SwissprotQ75LX74e-55KNOS4_ORYSJ; Homeobox protein knotted-1-like 4
TrEMBLA0A1D6KYU81e-109A0A1D6KYU8_MAIZE; Homeobox protein knotted-1-like 1
STRINGSb01g012200.12e-68(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47462950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.14e-38KNOTTED-like from Arabidopsis thaliana