PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02580.1.g00050.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 342aa    MW: 37317.9 Da    PI: 6.1734
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02580.1.g00050.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.8e-161564148
                                    TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                                    +g+WT+eEd  lv+ ++++Gg+  +W+  ++  g++R++k+c++rw +yl
  Zpz_sc02580.1.g00050.1.sm.mkhc 15 KGPWTEEEDRTLVEHIQKHGGHvsSWRNLPKAAGLNRCGKSCRLRWTNYL 64
                                    79**********************************************97 PP
2Myb_DNA-binding54.92e-1770114147
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     rg++T +E+ l++ ++++lG++ W+tIa ++  gRt++++k++w+++
  Zpz_sc02580.1.g00050.1.sm.mkhc  70 RGNFTDDEERLIIALHAELGNK-WSTIATHLE-GRTDNEIKNYWNTH 114
                                     89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.8281064IPR017930Myb domain
SuperFamilySSF466892.16E-2812111IPR009057Homeodomain-like
SMARTSM007171.8E-111466IPR001005SANT/Myb domain
PfamPF002498.3E-151564IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-221671IPR009057Homeodomain-like
CDDcd001679.35E-101764No hitNo description
PROSITE profilePS5129427.54965119IPR017930Myb domain
SMARTSM007174.0E-1669117IPR001005SANT/Myb domain
PfamPF002493.1E-1570114IPR001005SANT/Myb domain
CDDcd001672.72E-1272115No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2672120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGRSPCCCHD AGVKKGPWTE EEDRTLVEHI QKHGGHVSSW RNLPKAAGLN RCGKSCRLRW  60
TNYLRPDIKR GNFTDDEERL IIALHAELGN KWSTIATHLE GRTDNEIKNY WNTHIRKKLV  120
RMGVDPVTHQ RLPPDDILNG ALASPGGLPG TLLCAAASSF RDLDTALRQA QALQLLLQVV  180
GSSSNLTGSA ALLGNYNLPT GNAMLSNVNN SVAPNLRDQT MSIFSPANNR PAAGYYPPCD  240
AGAANFAEQG MAQQCLKSSA PSPSCGSPNG ELAADQYCNT TAALERPAAY TQEAAATGVD  300
LPVPVQTFTD LLEPREMPNL YSLEEDDRLW DWDDMLHSSF HL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-28151197108B-MYB
1h8a_C9e-281511927128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02580.1.g00050.1.sm.mkhc
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794321e-168HF679432.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB26 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105856.11e-120transcription factor MYB2
SwissprotQ9S9Z21e-65MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A3L6Q4P11e-120A0A3L6Q4P1_PANMI; Transcription factor MYB39
STRINGGRMZM2G081557_P011e-119(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62652955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-71myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]