PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc02580.1.g00020.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 824aa MW: 90457.5 Da PI: 9.732 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.8 | 3.3e-15 | 480 | 527 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ ++++ G +W++ ++ g+ R++k+c++rw +yl Zpz_sc02580.1.g00020.1.am.mk 480 KGSWTPEEDMRLIAYIQRCGHANWRALPKQAGLLRCGKSCRLRWINYL 527 799*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.1 | 7.6e-17 | 533 | 578 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l Zpz_sc02580.1.g00020.1.am.mk 533 RGNFTVEEEETIIKLHAMLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 578 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-22 | 471 | 530 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.766 | 475 | 527 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.96E-29 | 477 | 574 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-12 | 479 | 529 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-14 | 480 | 527 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.56E-9 | 482 | 527 | No hit | No description |
PROSITE profile | PS51294 | 25.265 | 528 | 582 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-26 | 531 | 581 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-15 | 532 | 580 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-15 | 533 | 578 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.18E-11 | 535 | 578 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 824 aa Download sequence Send to blast |
MDRYIEFSDN KENGVTRAET RRLVDTPTGD YAEANGLRSR SRPNRNWKPR ILCNISHPAV 60 SHLRAGAACQ SIGLARPTEC SAHVSPAPRL SLQGDADVMG LSVRRESSSQ LAAAARDDGS 120 VRGFTPASET AQTPAAFGVA LYHPRARAWR RSYHPRVLLQ FCKAEPPFTM TMRASKRAAH 180 PTNCRASKRA RKVARQDGVA GYGFRGAVEE RRRILPTCTK KPLLNIIPVS EINKLAFAHT 240 PVMSDERTLM LRPFHPSDTI AVRSNVSPHR VSATRYKSNR DNVRDLQDER KQACVKGPRD 300 RQRRRGIQLR RFDGQASTPP PSPNRDHTSP HEIAAAELDA PGVRAAEING HATPAGPSVL 360 LGIRGGCKRR RSVRLAPSWS LVRRVCAGGS VRAARATRPR PVSPVARVKG RDASLHRARV 420 YKYAAPCQCP GCSFLPHPVQ SSQHRRREQS ITRRRSLRCL WPGLMGKGRA PCCAKVGLNK 480 GSWTPEEDMR LIAYIQRCGH ANWRALPKQA GLLRCGKSCR LRWINYLRPD LKRGNFTVEE 540 EETIIKLHAM LGNKWSKIAA CLPGRTDNEI KNVWNTHLKK RVAPCGEQEH TAKKKKKKNS 600 AGAEATVPSP SPSPASSTTT TTNCSSGDSG EQQSNASCKE PDELDLKTLN IPTLDTAGFD 660 FDFDLDMLVD HPAPELHHPS LSVPTSPCAS STSPPAPATN VDGLLALPEI DIDQELWSII 720 DGDGACSFTE TPAPPCHGNA TEPDAATTSR EEDGKEWWLE NLERELGLWG PVEDYQCPAG 780 PLGLAEPDLP PMVQEQDPVT CYFQAGSTAA PLQGPELSSN QMTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-25 | 478 | 582 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 299 | 304 | DRQRRR |
2 | 578 | 597 | KKRVAPCGEQEHTAKKKKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc02580.1.g00020.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111960 | 1e-145 | AK111960.1 Oryza sativa Japonica Group cDNA clone:001-031-D02, full insert sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2154 | 37 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 5e-65 | myb domain protein 63 |