PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02539.1.g00090.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 345aa    MW: 35726.3 Da    PI: 10.1642
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02539.1.g00090.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.5e-2094142355
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa+a++a +++l+g
  Zpz_sc02539.1.g00090.1.am.mk  94 YRGVRRRP-WGKWAAEIRDPK----KaARVWLGTFATAEDAARAYDAVALRLRG 142
                                   9*******.**********94....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.5E-3293151IPR001471AP2/ERF domain
PfamPF008472.3E-1393142IPR001471AP2/ERF domain
SMARTSM003801.4E-3693156IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2293151IPR016177DNA-binding domain
PROSITE profilePS5103225.01493150IPR001471AP2/ERF domain
PRINTSPR003672.3E-1194105IPR001471AP2/ERF domain
CDDcd000181.29E-25101152No hitNo description
PRINTSPR003672.3E-11116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MWTPPFLAPA PATLSEDPEE AAIVAALTQV LAGGRSTTTT PMPPASLCPT TAMVCGPWHV  60
GQAACQGEPS ASASVGQVSE PGAAVATAPI RRNYRGVRRR PWGKWAAEIR DPKKAARVWL  120
GTFATAEDAA RAYDAVALRL RGSRAKLNFP EDTASSRRRP PAPVGSRQPS SSACDSVAGR  180
RLSCPEVVHH RRGAPDDFTG CSNGRFLSSW SIGGQASLSP VCSAAPGAPL LCGSQGMGIN  240
SSDPGATGGA GAPHPRCSPS SRHSSIHCVL QDSDDLGACP AADIPISKPS SGVPPSKDPR  300
ARRGRRGRVW GWGGEWGMAD GSSGVGLVAA QKLRKGRFNS LLYAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2392150463ATERF1
3gcc_A5e-2392150463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02539.1.g00090.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1078528e-50AK107852.1 Oryza sativa Japonica Group cDNA clone:002-134-A10, full insert sequence.
GenBankAP0056118e-50AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21.
GenBankAP0057718e-50AP005771.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0069D13.
GenBankAP0149588e-50AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK3YYC02e-53K3YYC0_SETIT; Uncharacterized protein
STRINGSi019270m3e-54(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150381120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.15e-24related to AP2 6