PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc02536.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 157aa MW: 17168.6 Da PI: 10.9096 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.5 | 2.9e-17 | 22 | 71 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrd + ng +r++lg+f++ e Aa a+++a+++ +g Zpz_sc02536.1.g00010.1.am.mk 22 FIGVRRRP-WGRFAAEIRDSTRNG--ARVWLGTFDSVEAAAMAYDQAALSARG 71 57******.**********44465..***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 7.4E-25 | 21 | 85 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.954 | 21 | 79 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-18 | 22 | 76 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.5E-24 | 22 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-8 | 22 | 33 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.9E-13 | 22 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-8 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
LHRLPVIQHY LQRPSSPCKE AFIGVRRRPW GRFAAEIRDS TRNGARVWLG TFDSVEAAAM 60 AYDQAALSAR GPAAVLIVPV ERSSVAAGGG TPVLQLKSRH SKRKRRKKSE TAAAAAAANG 120 SAIGRNKSVM SEQRRFVVEL EDLGADYLEE LLRISEC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-22 | 22 | 81 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 101 | 106 | KRKRRK |
2 | 101 | 107 | KRKRRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc02536.1.g00010.1.am.mk |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004959050.1 | 4e-43 | ethylene-responsive transcription factor 1 | ||||
Swissprot | A0A3Q7I5Y9 | 4e-34 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | K4A2J1 | 1e-41 | K4A2J1_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ba02374.1.p | 4e-44 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 1e-29 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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