PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02513.1.g00050.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 280aa    MW: 29481.7 Da    PI: 4.5359
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02513.1.g00050.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.76e-1892141255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Zpz_sc02513.1.g00050.1.sm.mk  92 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 141
                                   69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-2192150IPR016177DNA-binding domain
SMARTSM003801.6E-3592155IPR001471AP2/ERF domain
PfamPF008472.5E-1292141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-3292150IPR001471AP2/ERF domain
PROSITE profilePS5103223.39392149IPR001471AP2/ERF domain
PRINTSPR003671.4E-1093104IPR001471AP2/ERF domain
CDDcd000184.84E-3193151No hitNo description
PRINTSPR003671.4E-10115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MVQELQETSS SSSATTSSCT ASSTASCSST VTDSSSSPAS PAEANATPAP RKRQAAEAEA  60
EAGGEDEEEE EGCAVKAMAK KRKRSSEGKH PTYRGVRMRA WGKWVSEIRE PRKKSRIWLG  120
TFPTAEMAAR AHDVAALAIK GRAAHLNFPD LAGVLPHAAS AAPKDVQAAA ALAAAFTTDP  180
ETAATTAPCH PQQEPANNNA VAQVDSAAEE TLPAPPPAAS PLATPSSSSV VEDERQLFDL  240
PDLLPDIRDG FGCFPAMWAP LPDVEEVNAE LRLEEPLLWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-18901491272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17984KKRKRS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02513.1.g00050.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3147031e-161KF314703.1 Setaria italica clone SiDREB hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001274158.11e-84uncharacterized protein LOC101781338
SwissprotQ8LBQ73e-53ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1E5V3V54e-90A0A1E5V3V5_9POAL; Ethylene-responsive transcription factor ERF034
STRINGOPUNC10G16830.11e-85(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-40ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]