PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02498.1.g00020.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HSF

Protein Properties

Length: 310aa MW: 33050.4 Da PI: 6.1184

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02498.1.g00020.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	100.8	1.3e-31	11	131	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT........ CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks........ 74 Fl+k+y ++ed+ ++++isw+++g++fvv+ ++efa+++Lpk+Fkhsnf+SFvRQLn+Y + +++ + Zpz_sc02498.1.g00020.1.am.mk 11 FLTKTYAMVEDPGTDDTISWNDTGKAFVVWRPDEFARDLLPKHFKHSNFSSFVRQLNTYVSSHPFSSSY---Tqpfvrldr 88 9********************************************************5333222222...124567779 PP .............X..TTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 75 .............k..ekiweFkhksFkkgkkellekikrkks 102 k + weF+h+ F++g+k+ll i+r+k Zpz_sc02498.1.g00020.1.am.mk 89 dhelglccvqgfkKavADRWEFAHDCFRRGEKHLLGGIQRRKG 131 999988888776515699********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	3.7E-35	7	129	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.4E-45	7	129	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.62E-30	7	129	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	5.5E-29	11	129	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.2E-14	11	34	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.2E-14	49	61	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.2E-14	62	74	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MASPAAGTPP FLTKTYAMVE DPGTDDTISW NDTGKAFVVW RPDEFARDLL PKHFKHSNFS 60 SFVRQLNTYV SSHPFSSSYT QPFVRLDRDH ELGLCCVQGF KKAVADRWEF AHDCFRRGEK 120 HLLGGIQRRK GTGAGAGAAA GPGIPTAIPI SSPPTSSGGE TAVSSSPPRG VAVAPGLTRE 180 LARARRLCDG VRRLMSRYDH GGEGEDEAGS DGGRGGGAGP DGKPMLFGVA IGSKRHRGNE 240 EEEEEDDGAE DNGEEEDDDD ERPVVRARES KKRNDQSDLD VLALSVRAAA AARPGSGAAA 300 GSRDRKSSVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	5e-21	1	129	11	120	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02498.1.g00020.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL663003	2e-84	AL663003.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0032E06, complete sequence.
GenBank	AP014960	2e-84	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	2e-84	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855149	2e-84	CR855149.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0103M18, complete sequence.
GenBank	CR855165	2e-84	CR855165.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0139P06, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976526.1	1e-101	heat stress transcription factor B-2a-like
Swissprot	Q7XRX3	1e-92	HFB2A_ORYSJ; Heat stress transcription factor B-2a
TrEMBL	A0A1E5VLV9	1e-107	A0A1E5VLV9_9POAL; Heat stress transcription factor B-2a
STRING	Sb06g025710.1	4e-98	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11660.1	1e-40	HSF family protein

Publications ? help Back to Top
Nakayama A, et al. Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice. BMC Plant Biol., 2013. 13: p. 150 [PMID:24093634]