PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02442.1.g00110.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family BES1
Protein Properties Length: 503aa    MW: 56305.6 Da    PI: 6.8351
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02442.1.g00110.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822155.34.3e-48471864134
                          DUF822   4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaea 81 
                                     g++++++E+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r++ + l   + +
  Zpz_sc02442.1.g00110.1.sm.mkhc  47 GEREREREKERTKLRERHRRAITSRMLAGLRQHGNFPLPARADMNDVLAALARAAGWTVQPDGTTFRASPQVLpAPPPQ 125
                                     67899**************************************************************999988877788 PP

                          DUF822  82 agssasaspesslq.sslkssalaspvesysaspksssfpspssldsislasa.......a 134
                                      g++  +  e+++  ++l+s+a+ +p++s+++++++++++spsslds+ +a++        
  Zpz_sc02442.1.g00110.1.sm.mkhc 126 LGTFYPTPAETPTLtNTLNSYAIGTPLDSQASVLHTDDSLSPSSLDSVGVAEQsiksdnyG 186
                                     8888887777777769**********************************98855554441 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.8E-4647196IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene3DG3DSA:3.20.20.802.4E-127215502IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514454.22E-115215496IPR017853Glycoside hydrolase superfamily
PfamPF013734.0E-64238498IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.1E-32253267IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.1E-32274292IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.1E-32296317IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.1E-32389411IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.1E-32462481IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MSVKHPHPSP PDEEASLSPP VPPHRRPLGF ASATAPSAGS TPPRRRGERE REREKERTKL  60
RERHRRAITS RMLAGLRQHG NFPLPARADM NDVLAALARA AGWTVQPDGT TFRASPQVLP  120
APPPQLGTFY PTPAETPTLT NTLNSYAIGT PLDSQASVLH TDDSLSPSSL DSVGVAEQSI  180
KSDNYGNSSS VNTLNCMDND QLMRSSAVLV GDYTRTPYIP VYASLRMDII NSHCQLVDPE  240
SIRAELQHMK SLNVDGVVID CWWGIVEAWI PRKYEWSGYR DLFGIVKEFK LKVQVVLSFH  300
GSGETGSGDV LISLPKWIME IAQESPDIFF TDREGRRNTE CLSWGVDKER VLRGRTGIEV  360
YFDFMRSFHM EFRNLSEEGL ISAIEIGMGA SGELRYPSCP QKLGWRYPGI GEFQCYDRYM  420
QKNLRQAALS RGHLFWARGP DNAGYYNSRP HETGFFCDGG DYDSYYGRFF LSWYSGVLID  480
HVDQVLSLAT LAFDGAKIIV KVC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bfn_A1e-8721850211294BETA-AMYLASE
1q6c_A1e-8721850211294beta-amylase
1q6g_A1e-8721850211294beta-amylase
1wdp_A1e-8721850211294Beta-amylase
1wds_A1e-8721850211294Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02442.1.g00110.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811466.10.0beta-amylase 8 isoform X2
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A2T8KTQ00.0A0A2T8KTQ0_9POAL; Beta-amylase
STRINGSi016592m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]